cluster # 9359

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Schistosoma mansoni
cluster # 9359 cluster # 9359 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9359#0 length = 425 sequences # 8

consensus_9359#1 length = 239 sequences # 1

consensusID : consensus_9359#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 425
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC-TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAACCAACA]

[+] EMBL AI395044             [TTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCTACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTCTTTGTTAGAATTAGTATTATACGACAACCTACGCCTCAGAGTTAAACGCTGCATGCT            ]
[+] EMBL AI395127             [      TTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAAC TTCTTTCTC TTGTGAAAATTAGTA TATTCGA AAACTACG CTCAAAGTTAACCtggaaggtg             ]
[-] EMBL CD140545             [                         TCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTA                                                                                 ]
[+] EMBL CD146315             [                                                     TTTGTGTTCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTC                                                                                                                                                                                                                           ]
[-] EMBL CD185501             [                                                                 AGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAACCAACA]
[-] EMBL CD133908             [                                                                  GGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAGCCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAACCAACA]
[-] EMBL CD185281             [                                                                  GGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGATAACCGCTGCATGCTGGTCAACCAACA]
[+] EMBL CD138467             [                                                                                                                                                                                                                                                               CCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTC TTGTTAGAATTAGTATTATACGACAACCTACGCCTCANAGTTAA                        ]




>consensus_9359#0
TTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGT
TCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTT
TGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAG
CCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGT
CTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTCCA
CGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTCTTG
TTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAAC
CAACA

consensusID : consensus_9359#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [GGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGNGGAACGTTCACAAGAATCG]

[+] EMBL CD196283             [GGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGNGGAACGTTCACAAGAATCG]




>consensus_9359#1
GGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTTTGTTCCTC
CATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAGCCACCATA
TGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGTCTGATGGC
TTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGNGGAACGTTCACAAGAATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9359#0      TTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAGTTTGGTCAATAATTTATTTTTTGTGT 60
consensus_9359#1      ------------------------------------------------------------
                                                                                  

consensus_9359#0      TCCACAGGGGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTT 120
consensus_9359#1      --------GGTTTTCTTTTCTCTTCTTTTCTGTTCCTTGATGAGTTGTTTTAAAACTTTT 52
                              ****************************************************

consensus_9359#0      TGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAG 180
consensus_9359#1      TGTTCCTCCATCATGAAAGCACGAATGATTCGATTGCGGACACAAGTATGACAGCGAGAG 112
                      ************************************************************

consensus_9359#0      CCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGT 240
consensus_9359#1      CCACCATATGGCCTGTTAACAGTCTTCAATCTTTTACTCATTGAGGTTCTTTCACGGGGT 172
                      ************************************************************

consensus_9359#0      CTGGATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGGGGAACGTTC-C 299
consensus_9359#1      CTG-ATGGCTTGATACCGAAAAGTTTACTCTTGCAATCGCCACATTTGNGGAACGTTCAC 231
                      *** ******************************************** ********* *

consensus_9359#0      ACGTTTTTTTACATAGATATAGACAACCTTGCCACCAGGAGTTTTAACTTTCTTTCTCTT 359
consensus_9359#1      AAGAATCG---------------------------------------------------- 239
                      * *  *                                                      

consensus_9359#0      GTTAGAATTAGTATTATACGACAACCTACGCCTCAAAGTTAACCGCTGCATGCTGGTCAA 419
consensus_9359#1      ------------------------------------------------------------
                                                                                  

consensus_9359#0      CCAACA 425
consensus_9359#1      ------