cluster # 9372

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Schistosoma mansoni
cluster # 9372 cluster # 9372 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9372#0 length = 702 sequences # 7

consensus_9372#1 length = 459 sequences # 1
consensus_9372#2 length = 397 sequences # 1

consensusID : consensus_9372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 702
fasta sequence

                              [TCCTAGAGGTATCCACATCAACTCACGGGAATCCTGCTATTACATCTCTATTGCAGTTTCAGCTTGATATGTGGGAATTTGGAGTGATGCAGCTTTGTACCAGACCTAATGATATTAATAACCAAATGATCAAATTTTTTTACAATATGTTTCTATGATTACAAAACGATTCGTGACTAGAAATAAAACACTTTGATTAAAATAACTTACTGGAGTTTCAAGATTTATTTCTCTCGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTGGGGGACCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAA]

[+] EMBL CD061717             [TCCTAGAGGTATCCACATCAACTCACGGGAATCCTGCTATTACATCTCTATTGCAGTTTCAGCTTGATATGTGGGAATTTGGAGTGATGCAGCTTTGTACCAGACCTAATGATATTAATAACCAAATGATCAAATTTTTTTACAATATGTTTCTATGATTACAAAACGATTCGTGACTAGAAATAAAACACTTTGATTAAAATAACTTACTGGAGTTTCAAGATTTATTTCTCTCGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCC                                                                                                                                                                                           ]
[+] EMBL CD061928             [                                                                                                                                                                                                                                                                                        gatatCGGGAAT AGAGC AAAGTGCGT AAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCA                                                                        ]
[-] EMBL CD062438             [                                                                                                                                                                                                                                                                                                    CAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTG                                                                   ]
[+] EMBL CD061970             [                                                                                                                                                                                                                                                                                                          AAAACTG ATAGAA GTA  GCAAGAGGGTCGCTTTCAGTTGTT ATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGT                                                                ]
[-] EMBL CD061882             [                                                                                                                                                                                                                                                                                                               TGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCAC                                                                       ]
[+] EMBL CD064367             [                                                                                                                                                                                                                                                                                                                                                                                          taccCAGAAAGTGAGGT CTGCCGGTTTC ACAGGA TAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTAGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAATGGGGGA                                                          ]
[-] EMBL CD181130             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAA]




>consensus_9372#0
TCCTAGAGGTATCCACATCAACTCACGGGAATCCTGCTATTACATCTCTATTGCAGTTTC
AGCTTGATATGTGGGAATTTGGAGTGATGCAGCTTTGTACCAGACCTAATGATATTAATA
ACCAAATGATCAAATTTTTTTACAATATGTTTCTATGATTACAAAACGATTCGTGACTAG
AAATAAAACACTTTGATTAAAATAACTTACTGGAGTTTCAAGATTTATTTCTCTCGACTA
AAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAA
AAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATAT
TGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGAT
GTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAAC
GAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAAT
TCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTG
CTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTGGGGGACCGACGACTGCTAACA
GAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAA

consensusID : consensus_9372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [ATTAAATATGAAGTTTCAAGATTTATTTCTCGACGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAATATAAACAGCTGGTGACAGGAGAACTATGCAGATCCATTGGATATGGGTTTTCAAATGTTGTGAAGTTTGGAGATAAAAGATCGATAACAACAAGATCTTCTTGTAATAATATGGCAACTGCATAAGGATCCATTGTCTCACTTATGTAAGGAGACACACAAAGAGTTGTGAATTGAACAAGTTTATGATCCAATTGTAAAACAA]

[-] EMBL CD147765             [ATTAAATATGAAGTTTCAAGATTTATTTCTCGACGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAATATAAACAGCTGGTGACAGGAGAACTATGCAGATCCATTGGATATGGGTTTTCAAATGTTGTGAAGTTTGGAGATAAAAGATCGATAACAACAAGATCTTCTTGTAATAATATGGCAACTGCATAAGGATCCATTGTCTCACTTATGTAAGGAGACACACAAAGAGTTGTGAATTGAACAAGTTTATGATCCAATTGTAAAACAA]




>consensus_9372#1
ATTAAATATGAAGTTTCAAGATTTATTTCTCGACGACTTCGGATGCATCCCAAAATCGAA
CAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCC
ATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTC
CACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAG
GACAATCAACTAAATATAAACAGCTGGTGACAGGAGAACTATGCAGATCCATTGGATATG
GGTTTTCAAATGTTGTGAAGTTTGGAGATAAAAGATCGATAACAACAAGATCTTCTTGTA
ATAATATGGCAACTGCATAAGGATCCATTGTCTCACTTATGTAAGGAGACACACAAAGAG
TTGTGAATTGAACAAGTTTATGATCCAATTGTAAAACAA

consensusID : consensus_9372#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [ACCTTGACGTACTGGAACGAATACACGTAAATCTCTATCAGTTGGAGACGCAGATTGATAAGAGCTAACACTTCCACTGGATACGTGAGGCAATGACTGTTGGACAGTGTCTTTAGTTACGTTACCAAATACATTTTCAGCAGTATTCAAATGATCATCAGAGAAAGTATCACCAGTTGAATAGGCGAAACCAATATCATCTAATCCATCATAAGCCATATTGATATCCAGAACTGAAGTTTCAAGATTTATTTCTCGACGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATCAAATGGAAGAATATTGAGCATTGATA]

[+] EMBL CD147354             [ACCTTGACGTACTGGAACGAATACACGTAAATCTCTATCAGTTGGAGACGCAGATTGATAAGAGCTAACACTTCCACTGGATACGTGAGGCAATGACTGTTGGACAGTGTCTTTAGTTACGTTACCAAATACATTTTCAGCAGTATTCAAATGATCATCAGAGAAAGTATCACCAGTTGAATAGGCGAAACCAATATCATCTAATCCATCATAAGCCATATTGATATCCAGAACTGAAGTTTCAAGATTTATTTCTCGACGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATCAAATGGAAGAATATTGAGCATTGATA]




>consensus_9372#2
ACCTTGACGTACTGGAACGAATACACGTAAATCTCTATCAGTTGGAGACGCAGATTGATA
AGAGCTAACACTTCCACTGGATACGTGAGGCAATGACTGTTGGACAGTGTCTTTAGTTAC
GTTACCAAATACATTTTCAGCAGTATTCAAATGATCATCAGAGAAAGTATCACCAGTTGA
ATAGGCGAAACCAATATCATCTAATCCATCATAAGCCATATTGATATCCAGAACTGAAGT
TTCAAGATTTATTTCTCGACGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGT
TAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTC
AGTTGTTAATCAAATGGAAGAATATTGAGCATTGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9372#0      TCCTAGAGGTATCCACATCAACTCACGGGAATCCTGCTATTACATCTCTATTGCAGTTTC 60
consensus_9372#1      ------------------------------------------------------------
consensus_9372#2      ------------------------------------------------------------
                                                                                  

consensus_9372#0      AGCTTGATATGTGGGAATTTGGAGTGATGCAGCTTTGTACCAGACCTAATGATATTAATA 120
consensus_9372#1      ------------------------------------------------------------
consensus_9372#2      ---------------------------------------------------------ACC 3
                                                                                  

consensus_9372#0      ACCAAATGATCAAATTTTTTTACAATATGTTTCTATGATTACAAAACGATTCGTGACTAG 180
consensus_9372#1      ATTAAAT-ATGAAGTTTCAAGATT-TATTTCTCGACGACTTCGGA------TGCATCCCA 52
consensus_9372#2      TTGACGTACTGGAACGAATACACG-TAAATCTCTATCAGTTGGAGACG--CAGATTGATA 60
                         *  *  *  *        *   **  * ** *  * *            *       

consensus_9372#0      AAATAAAACACTTTGATTAA-AATAACTTACTGGAGTT---TCAAGATTTATTTCTCTCG 236
consensus_9372#1      AAATCGAACAGATCCATCAG-CATGTCCTGTGATGATTAATTCAGGAACTTGTTGACT-- 109
consensus_9372#2      AGAGCTAACACTTCCACTGGATACGTGAGGCAATGACTGTTGGACAGTGTCTTTAGTT-- 118
                      * *   ****  *  *      *              *     *     *  **   *  

consensus_9372#0      ACTAAAGTGTAATAAACAAGTATGGGTA--CTGCTTGCAGTTAATAGTTTACGGGAATCA 294
consensus_9372#1      ACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTG-----CTGAACACATCA 164
consensus_9372#2      ACGTTACCA-AATACATTTTCAGCAGTATTCAAATGATCATCA-----GAGAAAGTATCA 172
                      **   *     **        *    **  *   *                     ****

consensus_9372#0      GAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAA 354
consensus_9372#1      GGTTCA----GCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAA 220
consensus_9372#2      CCAGTT----GAATAGGCGAAACC---AATATCATCTAATCCATCATAAGCCATATTGAT 225
                                * * *      *     *            *       *     ** ** 

consensus_9372#0      GAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAG---GTACTGCCGGTTTCAACA 411
consensus_9372#1      AG----CAGGTATCAA-GTCTCCAGGACAATCAACTAAATATAAACAGCTGGTGACAGGA 275
consensus_9372#2      AT----CCAGAACTGAAGTTTCAAGATTTATTTCTCGAC---GACTAAAGTGTAATAA-A 277
                               * *   *  * *   *    *       *             **   *  *

consensus_9372#0      GGATTAGATGTATTAGTTGGG---GGGTTTGCAAACAACTTCGATGTACGAAACTTATAA 468
consensus_9372#1      GAACTATGCAGATCCATTGGATATGGGTTTTCAAATG-TTGTGAAGTTTGGAGATAAAAG 334
consensus_9372#2      CAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAAT-CAGAGCAAAAGTGCATAAA 336
                        * **     *    ***          *  *      *     *            * 

consensus_9372#0      AGTGGCGTTAACGAGA-CTTCGGATG----CATCCCAAAATCGAACAGATCCATCAGCAT 523
consensus_9372#1      ATCGATAACAACAAGATCTTCTTGTAATAATATGGCAACTGCATAAGGATCCATTGTCTC 394
consensus_9372#2      ATGTATGGCAAGAGGGTCGCTTTCAG-----TTGTTAATCAAATGGAAGAATATTGA-GC 390
                      *        **   *  *              *   **              **      

consensus_9372#0      GTCC-TGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTG 582
consensus_9372#1      ACTTATGTAAGGAGACACACAAAGAGTTGTGAATTGAACAAGT----TTATGATCCAATT 450
consensus_9372#2      ATTGATA----------------------------------------------------- 397
                           *                                                      

consensus_9372#0      ATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTGGGG 642
consensus_9372#1      GTAAAACAA--------------------------------------------------- 459
consensus_9372#2      ------------------------------------------------------------
                                                                                  

consensus_9372#0      GACCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAA 702
consensus_9372#1      ------------------------------------------------------------
consensus_9372#2      ------------------------------------------------------------