cluster # 9374

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Schistosoma mansoni
cluster # 9374 cluster # 9374 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9374#0 length = 466 sequences # 8

consensus_9374#1 length = 361 sequences # 1

consensusID : consensus_9374#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 466
fasta sequence

                              [CAGGCATGGCTGAGCAGCGAGAAAACGCATTTCAAAAGCAAGAAGTGAAAGGAAAGAATGGTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC-CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAA-TAAACGTATAG]

[+] EMBL CD128314             [CAGGCATGGCTGAGCAGCGAGAAAACGCATTTCAAAAGCAAGAAGTGAAAGGAAAGAATGGTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAG                                                              ]
[-] EMBL CD128298             [                                                AAGGAAAGAATGGTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGACACTCTGAGCAAAACCGTGTCATTC                                                                                    ]
[-] EMBL CD075107             [                                                                          AAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTATAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAA TAAACGTATAG]
[-] EMBL CD184503             [                                                                                  AGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTGCGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCA                                                                          ]
[+] EMBL CD081278             [                                                                                         GGTTAT AAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTATAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAA TAAACGTATA ]
[-] EMBL CD192204             [                                                                                                                                   GACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGG                                                                                                                                                                                                                                                             ]
[+] EMBL CD192332             [                                                                                                                                                             TGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGT                                                                                                                                                  ]
[-] EMBL AI740398             [                                                                                                                                                                                                                                                                                                                                           AGATGTCGTAACTGTCCGTGAGTGTAGAC CCCTGGGCAAAACCGTGTCATTCAATGNCNTCAAGGTTTCGAAAGCCGCTGGTTCAAAGTTCAAAAAAGCCTTCCAAAAGGTTTAATGCCTGAAATTAAACGctagg]




>consensus_9374#0
CAGGCATGGCTGAGCAGCGAGAAAACGCATTTCAAAAGCAAGAAGTGAAAGGAAAGAATG
GTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCG
GTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCC
TTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACC
TTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATT
TATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC
CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGT
ACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAATAAACGTATAG

consensusID : consensus_9374#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [GTGTCGGGGCTCAAGAACAAGAGGGGCCCCCCGGCCGGAGGAATACGGACCAGGGGGAAAGGGACGGACCCGGGGCGAAACCCTACAGGTGTTGTCCGGAAACCGAAATGAAACGGAGCAATGTGAATCGCCGTGACACCCTTAAGCACGTGAAGAAGGACAACCGATATGAGAAGCGACATAAGAATATGGCTGTACATTTATCCCCTTGCTCAGAGATGTGGCTGTTGGAGATGCCGTAACTGTCGGTGAGTGTAGACCCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAGAAAAGCCTTCCAAAAGTTTAATGCCTGAAATAACGTA]

[-] EMBL SMAA69892            [GTGTCGGGGCTCAAGAACAAGAGGGGCCCCCCGGCCGGAGGAATACGGACCAGGGGGAAAGGGACGGACCCGGGGCGAAACCCTACAGGTGTTGTCCGGAAACCGAAATGAAACGGAGCAATGTGAATCGCCGTGACACCCTTAAGCACGTGAAGAAGGACAACCGATATGAGAAGCGACATAAGAATATGGCTGTACATTTATCCCCTTGCTCAGAGATGTGGCTGTTGGAGATGCCGTAACTGTCGGTGAGTGTAGACCCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAGAAAAGCCTTCCAAAAGTTTAATGCCTGAAATAACGTA]




>consensus_9374#1
GTGTCGGGGCTCAAGAACAAGAGGGGCCCCCCGGCCGGAGGAATACGGACCAGGGGGAAA
GGGACGGACCCGGGGCGAAACCCTACAGGTGTTGTCCGGAAACCGAAATGAAACGGAGCA
ATGTGAATCGCCGTGACACCCTTAAGCACGTGAAGAAGGACAACCGATATGAGAAGCGAC
ATAAGAATATGGCTGTACATTTATCCCCTTGCTCAGAGATGTGGCTGTTGGAGATGCCGT
AACTGTCGGTGAGTGTAGACCCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTC
GAAAGCCGCTGGTTCAAAGTACAGAAAAGCCTTCCAAAAGTTTAATGCCTGAAATAACGT
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9374#0      CAGGCATGGCTGAGCAGCGAGAAAACGCATTTCAAAAGCAAGAAGTGAAAGGAAAGAATG 60
consensus_9374#1      ------------------------------------------------------------
                                                                                  

consensus_9374#0      GTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCG 120
consensus_9374#1      ------------------------------GTGTCGGGGCTCAAGAACAAGAGG-----G 25
                                                    **       *** * ** * *        *

consensus_9374#0      GTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCC 180
consensus_9374#1      GCCCCCCGGCCGGAGGAATACGGACCA--GGGGGAAAGGGACGGACCCG-GGGCGAAACC 82
                      *  *       *    **   *  **      ***** * *** * *** ** **** **

consensus_9374#0      TTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACC 240
consensus_9374#1      CTACAGGTGTTGTCCG-GAAACCGAAATGAAACGGAGCAATGTGAATCGCCGTGACACCC 141
                       *** ******** **  ****  ******* ****  * *** * **********  **

consensus_9374#0      TTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATT 300
consensus_9374#1      TTAAGCACGTGAAGAAGGACAACCGATATGAGAAGCGACATAAGAATATGGCTGTACATT 201
                      ***** *********** ******************************** *********

consensus_9374#0      TATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC 360
consensus_9374#1      TATCCCCTTGCT-CAGAGATGTGGCTGTTGGAGATGCCGTAACTGTCGGTGAGTGTAGAC 260
                      **** ******* *********************** ***********************

consensus_9374#0      CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGT 420
consensus_9374#1      CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGT 320
                      ************************************************************

consensus_9374#0      ACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAATAAACGTATAG 466
consensus_9374#1      ACAGAAAAGCCTTCCAAAAGTTT-AATGCCTGAAATAA-CGTA--- 361
                      *** ******************* ************** ****