|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1060 fasta sequence
[CGAGGCCATTAATTCGGCACGAGGGAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGTTGGTAGTATACATACTATGCCGGATCATCAAACTCAACAACAACAAAGATCAATGACGTCATTTAATCAACCACGTATGCATCCACAAGGTGGCGGGATGCAGCATATGGGAGTTAGGTAGACGGATAAAAACAAAGCGAGTATGACTGCATATCTGTATAAAACTTAGGGAGTATTTATTTATATGTATTCAGTTCTATGTACAAAAATAATATA]
[+] EMBL CD081754 [CGAGGCCATTAATTCGGCACGAGGGAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGTTGGTAGTATACATACTATGCCGGATC ]
[+] EMBL CD078528 [ AGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGNTGGTAGTATACATACTATGCCGGATCA ]
[-] EMBL CD135927 [ CCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCT ]
[-] EMBL CD072997 [ TATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCCCCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATTTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGTTGGTAGTATACATACTATGCCGGATCATCAAACTCAACAACAACAAAGATCAATGACGTCATTTAATCAACCACGTATGCATCCACAAGGTGGCGGGATGCAGCATATGGGAGTTAGGTAGACGGATAAAAACAAAGCGAGTATGACTGCATATCTGTATAAAACTTAGGGAGTATTTATTTATATGTATTCAGTTCTATGTACAAAAATAATATA]
consensusID : consensus_9383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 678 fasta sequence
[CTCCAGGCCAANAATTCGGCACGAGGCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAANTNNGCTACATATTACTANA]
[+] EMBL CD080596 [CTCCAGGCCAANAATTCGGCACGAGGCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAANTNNGCTACATATTACTANA]
[-] EMBL CD195829 [ ATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATG ]
[-] EMBL CD195776 [ CAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTTCCTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATG ]
consensusID : consensus_9383#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence
[GAATATCAGAAAGTGATGCTTTTCTTTACTGATGTCATTCAGGCATTCGGCAAGAGCGTTGAAGTCCGTCAACAAGTAATTGCAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGCAATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATNGTTCATTAGTCGTCTTTCATCCTTATCGTCCGNTGGTACAGTTTGGNGACGAACTTCGCCCCCCAAATGCATGAGTATGCTGATGTACTGNTAGGAACGTNCTGGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTNTTGCCTGCATTATCCNCCCCATATTATTGCTCTAGGTNGGCTTCAACTGGCTGGGGGAATTATTCAAAGTAANCCCGACNATAGGCGGTCCCCAAAATCAGTCAACATCGNTTGANTCNGNTTTCTTTTCACAAATAACATGGTACTGGGG]
[+] EMBL CD200346 [GAATATCAGAAAGTGATGCTTTTCTTTACTGATGTCATTCAGGCATTCGGCAAGAGCGTTGAAGTCCGTCAACAAGTAATTGCAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGCAATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCC ]
[+] EMBL SMCYCLNRM [ ATCAGAAAGTGATGNTTTNCTTTACTGATGTCATTCAGGCATTCGGNAAGAGCGTTGAAGTCCGTCAACAAGTAATTGNAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGCAATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTC AAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATNGTTCATTAGTCGTCTTTCATCCTTATCGTCCGNTGGTACAGTTTGGNGACGAACTTCGCCCCCCAAATGCATGAGTATGCTGATGTACTGNTAGGAACGTNCTGGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTNTTGCCTGCATTATCCNCCCCATATTATTGCTCTAGGTNGGCTTCAACTGGCTGGGGGAATTATTCAAAGTAANCCCGACNATAGGCGGTCCCCAAAATCAGTCAACATCGNTTGANTCNGNTTTCTTTTCACAAATAACATGGTACTGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9383#0 ------------------------------------------------------------
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 GAATATCAGAAAGTGATGCTTTTCTTTACTGATGTCATTCAGGCATTCGGCAAGAGCGTT 60
consensus_9383#0 ------------------------------------------------------------
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 GAAGTCCGTCAACAAGTAATTGCAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGC 120
consensus_9383#0 ------------------------------------------------------------
consensus_9383#1 --------------CTCCAGGCCAANAATTCGGCACGAGGCTTGTCTGTTTTTAGCATCT 46
consensus_9383#2 AATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCT 180
consensus_9383#0 CGAGGCCATTAATTCGGCACGAGG-----GAAAAAATCTAATGACATCATGTCGTAATGT 55
consensus_9383#1 AAAGTTGAGGAATTTGGTGTAGTTTCTC-AAAAAAATCTAATGACATCATGTCGTAATGT 105
consensus_9383#2 AAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAAATCTAATGACATCATGTCGTAATGT 240
** * **** ** ******************************
consensus_9383#0 GGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCA 115
consensus_9383#1 GGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCA 165
consensus_9383#2 GGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCA 300
************************************************************
consensus_9383#0 AGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTT 175
consensus_9383#1 AGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTT 225
consensus_9383#2 AGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATNGTTCATTAGTCGTCTT 360
******************************************* ****************
consensus_9383#0 TCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCC-AAATGCATGAGT 234
consensus_9383#1 TCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCC-AAATGCATGAGT 284
consensus_9383#2 TCATCCTTATCGTCCGNTGGTACAGTTTGGNGACGAACTTCGCCCCCCAAATGCATGAGT 420
**************** *********** * **************** ************
consensus_9383#0 ATGCTGATGTACTGTTAG-AACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGAC 293
consensus_9383#1 ATGCTGATGTACTGTTAG-AACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGAC 343
consensus_9383#2 ATGCTGATGTACTGNTAGGAACGTNCTGGGTGGCTAGTGAATGATAGTTTTCGAACAGAC 480
************** *** ***** ** ********************************
consensus_9383#0 GTGT-GCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGT 352
consensus_9383#1 GTGT-GCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGT 402
consensus_9383#2 GTNTTGCCTGCATTATCCNCCCCATATTATTGCTCTAGGTNGGCTTCAACTGGCTGGGGG 540
** * ************* *** **** ************ * ** ********** *
consensus_9383#0 AATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTT 412
consensus_9383#1 AATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTT 462
consensus_9383#2 AATTATTCAAAGTAANCCCGACNA--TAGGCGGTCCC--CAAAATCAGT-CAACATCGNT 595
******* ****** ** *** *** *** ** *** ****** ** ***** *
consensus_9383#0 TATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCA 472
consensus_9383#1 TATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCA 522
consensus_9383#2 TG---ANTCNGNTTTCT---TTTCA-CAAATAA-CATGGT-ACTGGGG------------ 634
* * ** *** * ***** ******* ****** *** **
consensus_9383#0 ATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATAT 532
consensus_9383#1 ATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATAT 582
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 GGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTT 592
consensus_9383#1 GGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTT 642
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 TGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCA 652
consensus_9383#1 TGATGAACTTGCTGAANTNNGCTACATATTACTANA------------------------ 678
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 ATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAG 712
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 TAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGG 772
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 TGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGC 832
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 TACGGGAACTGTTGGTAGTATACATACTATGCCGGATCATCAAACTCAACAACAACAAAG 892
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 ATCAATGACGTCATTTAATCAACCACGTATGCATCCACAAGGTGGCGGGATGCAGCATAT 952
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 GGGAGTTAGGTAGACGGATAAAAACAAAGCGAGTATGACTGCATATCTGTATAAAACTTA 1012
consensus_9383#1 ------------------------------------------------------------
consensus_9383#2 ------------------------------------------------------------
consensus_9383#0 GGGAGTATTTATTTATATGTATTCAGTTCTATGTACAAAAATAATATA 1060
consensus_9383#1 ------------------------------------------------
consensus_9383#2 ------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||