cluster # 9384

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Schistosoma mansoni
cluster # 9384 cluster # 9384 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9384#0 length = 603 sequences # 6
consensus_9384#1 length = 424 sequences # 1

consensus_9384#2 length = 323 sequences # 1
consensus_9384#3 length = 286 sequences # 1

consensusID : consensus_9384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 603
fasta sequence

                              [GNTAACACATTCTATTAATGACTCTTCTTCTTCACTATACAAGTCAGATACCAAG-TTCAGCAAAA-ACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACNCCGCTGCAGACTTTT-CAACGGANAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT-AACACAGACTATTAGTACTG-TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTATTAACTGCGACCTCTTTCGGAGTCTCACAAGACATTTCACATTATTGACGTGA]

[-] EMBL SM7451               [GNTAACACATTCTATTAATGACTCTTCTTCTTCACTATACAAGTCAGATACCAAGTTTCAGCAAAAGACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACNCCGCTGCAGACTTTTNCAACGGANAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGCAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGNAGAAGTAAAGTGTAAACACAGACTATTAGTACTGTTTCGAGAGTGGGGATGTGGNCCCCCATNATCGAA                                                                                                                                                                                                               ]
[-] EMBL CD116509             [                                              GATACCAAG TTCAGCAAAA ACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACTCCGCTGCAGACTTTT CAACGGAAAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCTTGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTA                                                                                                                                                                                                                                                     ]
[+] EMBL CD188980             [                                                                                                                                                              TAATACCGTCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTAAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTACTG TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGATATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGAGCGTATCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTGATTAACTGCGACCTCTTTCGGAGTCTCACAAGACATTTCACATTATTGACGTG ]
[-] EMBL CD185119             [                                                                                                                                                                      TCACACACCGTTAAGCTTAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTACTG TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCAC                                                                   ]
[-] EMBL CD133820             [                                                                                                                                                                                                                                                                                                                      AGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGT AACACAGACTATTAGTACTG TTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTACTGCACCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCACAAGACATTTCAAATTATTGACGTGA]
[+] EMBL CD141680             [                                                                                                                                                                                                                                                                                                                                                                                                   TACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTA                                                     ]




>consensus_9384#0
GNTAACACATTCTATTAATGACTCTTCTTCTTCACTATACAAGTCAGATACCAAGTTCAG
CAAAAACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACNCCGCTGC
AGACTTTTCAACGGANAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCT
TAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGG
ATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACAT
TACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTAC
TGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAG
GACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACC
ATGCTTTTTCATGAATAACTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGT
ATCCCATTTATTAACTGCGACCTCTTTCGGAGTCTCACAAGACATTTCACATTATTGACG
TGA

consensusID : consensus_9384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TTGATGCCCCTTTTTTGAGAGACCCGCTGAAATTTTCACCGGAGGGCTCTACTTTTTGGGAATACCGCACCCCCCGTTACGTAAATGTATATGGGACAATACTTGTCATGTGTGAGCATACTGCCATGGGGCAGCTGGATCTATCCTGTCTTATCTTCTTTGAGTCCAAGGTAGAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTTAACACAGACTATTAGTACTGTCCGAGGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCTATCATCAAGTGCT]

[-] EMBL AI764954             [TTGATGCCCCTTTTTTGAGAGACCCGCTGAAATTTTCACCGGAGGGCTCTACTTTTTGGGAATACCGCACCCCCCGTTACGTAAATGTATATGGGACAATACTTGTCATGTGTGAGCATACTGCCATGGGGCAGCTGGATCTATCCTGTCTTATCTTCTTTGAGTCCAAGGTAGAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTTAACACAGACTATTAGTACTGTCCGAGGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCTATCATCAAGTGCT]




>consensus_9384#1
TTGATGCCCCTTTTTTGAGAGACCCGCTGAAATTTTCACCGGAGGGCTCTACTTTTTGGG
AATACCGCACCCCCCGTTACGTAAATGTATATGGGACAATACTTGTCATGTGTGAGCATA
CTGCCATGGGGCAGCTGGATCTATCCTGTCTTATCTTCTTTGAGTCCAAGGTAGAGAAGA
CATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTT
AACACAGACTATTAGTACTGTCCGAGGAGTGGGGATGTGGGTACAAATAATCGAATAAGA
CTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTT
TGTGCGTCTCGGATTAAACCATGCTTTTTCATGAATAACTCTTTAGCTGCTATCATCAAG
TGCT

consensusID : consensus_9384#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [CAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTACGAAACATTATTTAGAACCTGCATTACCTCTTTAGCTGCATCATCAAGTGCTATT]

[+] EMBL CD187039             [CAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTTTTTCATGAATAACTACGAAACATTATTTAGAACCTGCATTACCTCTTTAGCTGCATCATCAAGTGCTATT]




>consensus_9384#2
CAGCTGGATCTAATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAA
TATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTA
TTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAG
CTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGA
TTAAACCATGCTTTTTCATGAATAACTACGAAACATTATTTAGAACCTGCATTACCTCTT
TAGCTGCATCATCAAGTGCTATT

consensusID : consensus_9384#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [CTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCCTCGTGCCGA]

[-] EMBL CD077420             [CTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGATTAAACCATGCTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCCTCGTGCCGA]




>consensus_9384#3
CTTCTCAATATACATTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAAC
ACAGACTATTAGTACTGTTCGAGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCC
GAAGCCAGCTATTAGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTG
CGTCTCGATTAAACCATGCTCTTTAGCTGCATCATCAAGTGCTATTTTTAGTGCACCAGT
ATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCCTCGTGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9384#0      GNTAACACATTCTATTAATGACTCTTCTTCTTCACTATACAAGTCAGATACCAAGTTCAG 60
consensus_9384#3      ------------------------------------------------------------
consensus_9384#1      ------------------------------------------------------------
consensus_9384#2      ------------------------------------------------------------
                                                                                  

consensus_9384#0      CAAAAACCCGTCGTATTGACTTCTTTGTAGTTCGCCTTTTATGTTGAAGAACNCCGCTGC 120
consensus_9384#3      ------------------------------------------------------------
consensus_9384#1      -----------------------------------------TTGATGCCCCTTTTTTGAG 19
consensus_9384#2      ------------------------------------------------------------
                                                                                  

consensus_9384#0      AGACTTTTCAACGGANAGCGTCCTGACTTTTTTGGTAATACCGTCACACACCGTTAAGCT 180
consensus_9384#3      ------------------------------------------------------------
consensus_9384#1      AGACCCGCTGAAATTTTCACCGGAGGGCTCTACTTTTTGGGAATACCGCACCCCCCGTTA 79
consensus_9384#2      ------------------------------------------------------------
                                                                                  

consensus_9384#0      TAAATGATATATGGGATCATACTTGTTCATGTATGAGCATACTGTCCATGAGTCAGCTGG 240
consensus_9384#3      ------------------------------------------------------------
consensus_9384#1      CGTAAATGTATATGGGACAATACTTGTCATGTGTGAGCATACTGCCATGGGGCAGCTGGA 139
consensus_9384#2      ----------------------------------------------------CAGCTGGA 8
                                                                                  

consensus_9384#0      ATCT-AATCCTGTCTTATCTTCTTTGAGTCCAGTGAAGAAGACATTCTTCTCAATATACA 299
consensus_9384#3      ----------------------------------------------CTTCTCAATATACA 14
consensus_9384#1      TCTA-TCCTGTCTTATCTTCTTTGAGTCCAAGGTAGAGAAGACATTCTTCTCAATATACA 198
consensus_9384#2      TCTAATCCTGTCTTATCTTCTTTGAGTCCA--GTGAAGAAGACATTCTTCTCAATATACA 66
                                                                    **************

consensus_9384#0      TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTA 359
consensus_9384#3      TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTA 74
consensus_9384#1      TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGT-TAACACAGACTATTAGTA 257
consensus_9384#2      TTACATACAGTGTTATTATAGCTGACAGGAAGAAGTAAAGTGTAACACAGACTATTAGTA 126
                      ***************************************** ******************

consensus_9384#0      CTGTTCGAG-AGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 418
consensus_9384#3      CTGTTCGAG-AGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 133
consensus_9384#1      CTGTCCGAGGAGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 317
consensus_9384#2      CTGTTCGAG-AGTGGGGATGTGGGTACAAATAATCGAATAAGACTCCGAAGCCAGCTATT 185
                      **** **** **************************************************

consensus_9384#0      AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCG-ATTAA 477
consensus_9384#3      AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCG-ATTAA 192
consensus_9384#1      AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCGGATTAA 377
consensus_9384#2      AGGACAGAAATCGTACACAAAATTAATCTTCCATCGAAAAGTTTGTGCGTCTCG-ATTAA 244
                      ****************************************************** *****

consensus_9384#0      ACCATGCTTTTTCATGAATAACTCTTTAGCTGC--ATCATCAAGTGCTATTTTTAGTGCA 535
consensus_9384#3      ACCATGCT---------------CTTTAGCTGC--ATCATCAAGTGCTATTTTTAGTGCA 235
consensus_9384#1      ACCATGCTTTTTCATGAATAACTCTTTAGCTGCT-ATCATCAAGTGCT------------ 424
consensus_9384#2      ACCATGCTTTTTCATGAA--------TAACTACGAAACATTATTTAGAACCTGCATTACC 296
                      ********                  ** ** *  * *** *  *               

consensus_9384#0      CCAGTATCCCATTTATTAACTGCGACCTCTTTCGGAGTCTCACAAGACATTTCACATTAT 595
consensus_9384#3      CCAGTATCCCATTTATTAACTGTGACCTCTTTCGGAGTCTCCTCGTGCCGA--------- 286
consensus_9384#1      ------------------------------------------------------------
consensus_9384#2      TCTTTAGCTGCATCATCAAGTGCTATT--------------------------------- 323
                                                                                  

consensus_9384#0      TGACGTGA 603
consensus_9384#3      --------
consensus_9384#1      --------
consensus_9384#2      --------