cluster # 9479

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Schistosoma mansoni
cluster # 9479 cluster # 9479 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9479#0 length = 1374 sequences # 8

consensus_9479#1 length = 506 sequences # 1

consensusID : consensus_9479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1374
fasta sequence

                              [CTGAACATTTGAAGTGTTTAGTACATCCATAACCAGAGGAGACTTTGAAACTTTCTTCATTAAACCAAGGAATTCTGTACTCACACTCTGGAATCTTTGTGATTCTTGAGGTAATAAAACTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAACGACGTTGTACATCTATCCAAACATCAAACAAAGCGTTAATCCTG-TTAAAC-GATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTCTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTAACGTTAAGTTTTTTCATTAAAGACTTCCAATGA-CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTGATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATTGGTTTCTCCTTTTCCCAAGATGATAATAATTCAGAGGTTTTACCCTCAACAATCTTATCTTCAGCTACAACTTTCATTTGAAGACTGGCCACTTGAGTACCAATACTATTTTCTTTTCGTCGTAAAATCTCTTGGAATGCACTCCATTCACCTAGAATATTTTCTGAATCCAACCAATTTGAAGGGAACTGGAAACGATCACGATAGAGAATATTTTGACCAGAACGATAGAGTTCCACTTGTTTTTCCCACACCTTCATTTTTCGTTTGACAGTCTGTGTATATGTGATAGCATTAACAGCTTCACCAGTACTTCCAGCTTCTATGGCCTGTTGTTCTAGATCGAGGGCGGCCTTAGATACTTGTGAGAATAGGTCT]

[+] EMBL CD149024             [CTGAACATTTGAAGTGTTTAGTACATCCATAACCAGAGGAGACTTTGAAACTTTCTTCATTAAACCAAGGAATTCTGTACTCACACTCTGGAATCTTTGTGATTCTTGAGGTAATAAAACTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAACGACGTTGTACATCTATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAAC GATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTCTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTAACGTTAAGTTTTTTCATTAAAGACTTCCAATGAGCGAac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD138025             [                                                                                                                                                                                             ATCAAACAAAGCGTTAATCCTG TTAAACNGATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTNTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTGACGTTAAGTTTTTTCATTAAAGACTTCCAATGA CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAGGAGTTCGTTTGACGTGTTCATAAGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD184827             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGATTTCTTTAATTACTGCCTCATTTTGTTGGAGATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTGACGTTAAGTTTTTTCATTAAAGACTTCCAATGA CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD116528             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGTTAATTCACACATAGTCCAATTAACGTTAAGTTTTTTCATTAGAGACTTCCAATGA CGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGGTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGAGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAGTTCAAGCCAAACATTTTTGAGATCCTGAAGATCTTCAAAAGCCACTTGTACACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD184860             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTAAAGACTTCCAATGA CGATCTTTANATGCTTCCGACTTCAATTCCACTATCATAACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTGTCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTGATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATT                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD183238             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTGCGTCTAACTGTTGTCTTAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGGCGATTGAACTTCCCTTCTAATATAGTTAGTTGATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATTGGTTTCTCCTTTTCCCAAGATGATAATAATTCAGAGGTTTTACCCTCAACAATCTTATCTTCAGCTACAACTTTCATTTGAAGACTGGCCACTTGAGTACCAATACTATTTTCTTTTCGTCGTAAAATCTCTTGGAATGCACTCCATTCACCTAGAATATTTTCTGAATCCAACCAATTTGAAGGGAACTGGAAACGATCACGATAGAGAATATTTTGACCAGAACGATAGAGTTCCACTTGTTTTTCCCACACCTTCATTTTTCGTTTGACAGTCTGTGTATATGTGATAGCATTAACAGCTTCACCAGTACTTCCAGCTTCTATGGCCTGTTGTTCTAGATCGAGGGCGGCCTTAGATACTTGTGAGAATAGGTCT]
[-] EMBL CD119618             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TAGCTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD179833             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAGCCACTTGTACACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGTTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_9479#0
CTGAACATTTGAAGTGTTTAGTACATCCATAACCAGAGGAGACTTTGAAACTTTCTTCAT
TAAACCAAGGAATTCTGTACTCACACTCTGGAATCTTTGTGATTCTTGAGGTAATAAAAC
TTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAACGACGTTGTACATC
TATCCAAACATCAAACAAAGCGTTAATCCTGTTAAACGATCTTCCCAGGCCAAGGCTTCC
TCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCT
TTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGA
ATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTCTAAG
GCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAGA
TCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTAACGTTAAGTTTT
TTCATTAAAGACTTCCAATGACGATCTTTTAATGCTTCCGACTTCAATTCCACTATCATA
ACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTGT
CTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAGC
TTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAACA
TGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTACA
CGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACGT
TGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTGA
TTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATTGGTTTCTCCTTTTCCCAAGATGAT
AATAATTCAGAGGTTTTACCCTCAACAATCTTATCTTCAGCTACAACTTTCATTTGAAGA
CTGGCCACTTGAGTACCAATACTATTTTCTTTTCGTCGTAAAATCTCTTGGAATGCACTC
CATTCACCTAGAATATTTTCTGAATCCAACCAATTTGAAGGGAACTGGAAACGATCACGA
TAGAGAATATTTTGACCAGAACGATAGAGTTCCACTTGTTTTTCCCACACCTTCATTTTT
CGTTTGACAGTCTGTGTATATGTGATAGCATTAACAGCTTCACCAGTACTTCCAGCTTCT
ATGGCCTGTTGTTCTAGATCGAGGGCGGCCTTAGATACTTGTGAGAATAGGTCT

consensusID : consensus_9479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [TAGTGCATCCATAACCAGAGGAGACTTTAGAGCGTTCTTCATTGAGCCAAGGAATTCTGTAGTCACACTCTGGAATCTGTGTGATTCTTGAGGTAATAGAGCTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAGCGACGTTGTGCATCTATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAACGATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTGTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTGTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATCTTGTTAGAGATCTAATTCCCACATATGACCAAGTGTTAATTCATGTCCACAAG]

[-] EMBL CD154491             [TAGTGCATCCATAACCAGAGGAGACTTTAGAGCGTTCTTCATTGAGCCAAGGAATTCTGTAGTCACACTCTGGAATCTGTGTGATTCTTGAGGTAATAGAGCTTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAGCGACGTTGTGCATCTATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAACGATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTGTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTGTAAGGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATCTTGTTAGAGATCTAATTCCCACATATGACCAAGTGTTAATTCATGTCCACAAG]




>consensus_9479#1
TAGTGCATCCATAACCAGAGGAGACTTTAGAGCGTTCTTCATTGAGCCAAGGAATTCTGT
AGTCACACTCTGGAATCTGTGTGATTCTTGAGGTAATAGAGCTTTGATATCGGCAGAACC
TGCGAAAATACCATCAAGGTATACCCAGCGACGTTGTGCATCTATCCAAACATCAAACAA
AGCGTTAATCCTGTTTAAACGATCTTCCCAGGCCAAGGCTTCCTCCTCAAATTGTTTAAA
ATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTCTGTGATGCGGTTAAACAA
ATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGGAATAAGTTCAAGTGTATA
GTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTGTAAGGCTTTCTCACCCTGAGC
AACCAGTAAGATTTCTTTAATTACTGCCTCATCTTGTTAGAGATCTAATTCCCACATATG
ACCAAGTGTTAATTCATGTCCACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9479#0      CTGAACATTTGAAGTGTTTAGTACATCCATAACCAGAGGAGACTTTGAAACTTTCTTCAT 60
consensus_9479#1      ------------------TAGTGCATCCATAACCAGAGGAGACTTTAGAGCGTTCTTCAT 42
                                        **** ***********************  * * ********

consensus_9479#0      TAAACCAAGGAATTCTGTACTCACACTCTGGAATCTTTGTGATTCTTGAGGTAATAAAAC 120
consensus_9479#1      TGAGCCAAGGAATTCTGTAGTCACACTCTGGAATCTGTGTGATTCTTGAGGTAATAGAGC 102
                      * * *************** **************** ******************* * *

consensus_9479#0      TTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAACGACGTTGTACATC 180
consensus_9479#1      TTTGATATCGGCAGAACCTGCGAAAATACCATCAAGGTATACCCAGCGACGTTGTGCATC 162
                      ********************************************* ********* ****

consensus_9479#0      TATCCAAACATCAAACAAAGCGTTAATCCTGTT-AAACGATCTTCCCAGGCCAAGGCTTC 239
consensus_9479#1      TATCCAAACATCAAACAAAGCGTTAATCCTGTTTAAACGATCTTCCCAGGCCAAGGCTTC 222
                      ********************************* **************************

consensus_9479#0      CTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTC 299
consensus_9479#1      CTCCTCAAATTGTTTAAAATAGGGTGATAACTTCATGGCACTCAAACTGTTTATATGTTC 282
                      ************************************************************

consensus_9479#0      TTTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGG 359
consensus_9479#1      TGTGATGCGGTTAAACAAATCGTCCCAACCGCGAATTAGTCGACATTTATCCTGATAGGG 342
                      * **********************************************************

consensus_9479#0      AATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTCTAA 419
consensus_9479#1      AATAAGTTCAAGTGTATAGTTCTTCCATACTTCAGTGACTTGTTTAAGAAATTCTTGTAA 402
                      ******************************************************** ***

consensus_9479#0      GGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATTTTGTTGGAG 479
consensus_9479#1      GGCTTTCTCACCCTGAGCAACCAGTAAGATTTCTTTAATTACTGCCTCATCTTGTTAGAG 462
                      ************************************************** ***** ***

consensus_9479#0      ATCTAATTCCCACATATGACCAAGTGTTAATTCAGACATAGTCCAATTAACGTTAAGTTT 539
consensus_9479#1      ATCTAATTCCCACATATGACCAAGTGTTAATTCATGTCCA---CAAG------------- 506
                      **********************************     *   ***              

consensus_9479#0      TTTCATTAAAGACTTCCAATGACGATCTTTTAATGCTTCCGACTTCAATTCCACTATCAT 599
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      AACATTGGACTTGGCATAATTTTGAAGAGTTCGTTTGACGTGTTCATAAGATGAATATTG 659
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      TCTAAGTCGCGCTGGAAGTTCCTTTAATTGTCCTGCAAGTGCGTCTAACTGTTGTCTTAG 719
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      CTTGCGCGGTTGGACAGTTTGCCAAGGAGTCTCTTTCATTAACTCGATTTGTTCCCAAAC 779
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      ATGGGATAATTCAAGCCAAACATTTTTGAGATCCTGAAGTTCTTCAAAAGCCACTTGTAC 839
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      ACGTTGTTCTGTTGGTGACAGTAAACCGGATTCAGTCAATTCTAAAGCTTCTTTAGCACG 899
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      TTGAATATTATCACGTTCTTCACGTAGACGATTGAACTTCCCTTCTAATATAGTTAGTTG 959
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      ATTGACAGCCTCTTCCGGTTTTAGATTACCGGCAATTGGTTTCTCCTTTTCCCAAGATGA 1019
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      TAATAATTCAGAGGTTTTACCCTCAACAATCTTATCTTCAGCTACAACTTTCATTTGAAG 1079
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      ACTGGCCACTTGAGTACCAATACTATTTTCTTTTCGTCGTAAAATCTCTTGGAATGCACT 1139
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      CCATTCACCTAGAATATTTTCTGAATCCAACCAATTTGAAGGGAACTGGAAACGATCACG 1199
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      ATAGAGAATATTTTGACCAGAACGATAGAGTTCCACTTGTTTTTCCCACACCTTCATTTT 1259
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      TCGTTTGACAGTCTGTGTATATGTGATAGCATTAACAGCTTCACCAGTACTTCCAGCTTC 1319
consensus_9479#1      ------------------------------------------------------------
                                                                                  

consensus_9479#0      TATGGCCTGTTGTTCTAGATCGAGGGCGGCCTTAGATACTTGTGAGAATAGGTCT 1374
consensus_9479#1      -------------------------------------------------------