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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1149 fasta sequence
[GGAGGCGCTCCTTTGTGTTGGTTGCGTTGTTTGTCTCTTTTTTCTCAAAATACGGGTTAGTTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTTTTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAATTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGAACACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGGTTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAAGTTAGAAGGACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACGAATGAAACTGTTGGGATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATATAAATTCCGACTTCGGACCTGCTACTGTAAAATTATTTCTTTCAGCTGCTACGCTCTTAGACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAAACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATCTAAATTTTAAAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTACAAATATTATGATGGTTAGAAGAAAAAAAAAAAAAAAAAACATACCATCATGCTTGCAGCTGCATTA]
[+] EMBL CD122948 [GGAGGCGCTCCTTTGTGTTGGTTGCGTTGTTTGTCTCTTTTTTCTCAAAATACGGGTTAGTTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTTTTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAATTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGAACACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGGTTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAAGTTAGAAGGACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACCAATGAAGCTGATG ]
[+] EMBL CD078959 [ TTTTTCTCAAAATACGGGTTAGTTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTTTTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAATTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGATCACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGGTTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAAGTTAGAAGAACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACGAATGAAACTGTTGGGATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATATAAATTCCGACTTCGGACCTGCTACTGTAAAATTATTTCTTTCAGCTGCTACGCTCTTAGACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAANAGACTAGAAAGTATGCCANATGGAAGGCCGT ]
[+] EMBL CD098187 [ TGTGAAGAAATTACGAATGAAACTGTTGGGATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATATAAATTCCGACTTCGGACCTGCTACTGTAAAATTATTTCTTTCAGCTGCTACGCTCTTAGACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAGCAACCGCCTAATCCTGATCCATCTCCATCTGACTATNATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTG ]
[-] EMBL AW017051 [ nAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGAACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAAACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATCTAAATTTTAAAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTACAAATATTATGAT ]
[+] EMBL CD183444 [ AGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTG ]
[-] EMBL CD073413 [ AAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTTTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAAACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATTTAAATTTTAAAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTACAAATATTATGAT ]
[+] EMBL CD120692 [ TGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGC ]
[+] EMBL CD133184 [ ATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTG ]
[-] EMBL AI977516 [ AGTGCATCAAATTTCCAGGATAGAGGAACAACCGTGAAATTCTTGAAGCAAGCGTTAAAAACTCTTGGAGTTGATATCTAAATTTTAAAATGGTGTTTTAAATTTTAATTTACGATGCGCAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTAAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTTCAAATATTCTGTTGGTTAGAAGAAAAAAAAAAAAAAAAAACATACCATCATGCTTGCAGCTGCATTA]
consensusID : consensus_9497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence
[CAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGAGTTGGAGAAGTAGGTGATGATGTGAGCTATTATTTACTCATCCGGTGATATACTTTTTTTCTAATGCTAGATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATA]
[-] EMBL CD178450 [CAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGAGTTGGAGAAGTAGGTGATGATGTGAGCTATTATTTACTCATCCGGTGATATACTTTTTTTCTAATGCTAGATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9497#0 GGAGGCGCTCCTTTGTGTTGGTTGCGTTGTTTGTCTCTTTTTTCTCAAAATACGGGTTAG 60
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 TTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTT 120
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 TTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAA 180
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 TTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGA 240
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 ACACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGG 300
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 TTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAA 360
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 GTTAGAAGGACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACGAATGAAACTGTTGG 420
consensus_9497#1 -----------------------------------CAGCAAATGCTTG-AAGTCTGGCGA 24
** ** * * * *** *
consensus_9497#0 GATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATAT 480
consensus_9497#1 AGTTCCAGTAGCTGGTCC---TATTCCTAACAC---CGAAGCTGCTTACACCCCAAATAT 78
**** * ** * * ** ** ** ********* ****
consensus_9497#0 AAATTCCGACTTCGGACCTGCTACTG-TAAAATTATTTCTT-TCAGCTGCTACGCTCTTA 538
consensus_9497#1 ---TTCTGGAGTTGGAGAAGTAGGTGATGATGTGAGCTATTATTTACTCATCCGGTGATA 135
*** * * *** * ** * * * * * ** * ** * ** * **
consensus_9497#0 GACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCC 598
consensus_9497#1 TACTTTTTTTCTAATGCTAG----------------ATCGAAAAGACTAGAAAGTATGCC 179
** ** ***** * * * ************************
consensus_9497#0 AAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGT 658
consensus_9497#1 AAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGT 239
************************************************************
consensus_9497#0 CCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAAT 718
consensus_9497#1 CCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATA----- 294
*******************************************************
consensus_9497#0 AATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCT 778
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 GAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGG 838
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 TTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAA 898
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 ACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATCTAAATTTTA 958
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 AAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACAT 1018
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 CATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAA 1078
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 GCTACAAATATTATGATGGTTAGAAGAAAAAAAAAAAAAAAAAACATACCATCATGCTTG 1138
consensus_9497#1 ------------------------------------------------------------
consensus_9497#0 CAGCTGCATTA 1149
consensus_9497#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||