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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1071 fasta sequence
[CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGCTCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAA---A----AAAAAAAAAAAAAAAAA]
[+] EMBL CD192938 [CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGCTCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGA ]
[+] EMBL CD078933 [ CACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAA ]
[+] EMBL CD147930 [ AGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGGATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACT ]
[-] EMBL CD155069 [ GAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCCTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGCTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA ]
[-] EMBL CD154944 [ GAGCTATAGGTTCACCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA ]
[-] EMBL CD155018 [ GAGCTATAGGTTCACCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA ]
[-] EMBL AI395829 [ AACATGTCGTTTGTTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTAATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGCTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTAAAAAAAAAAAAAAAAA]
[-] EMBL CD073388 [ TGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTTTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTTTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGT ]
[-] EMBL AI395496 [ CTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAA A AAAAAAAAAAAAAAAA ]
consensusID : consensus_9515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[TTTCATCAAAACCTCCTCATAAACTGTATACCCTACAAATCTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTAGTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTAAAGCTAACTTACCACAAAAAAAAAAAAAAAA]
[-] EMBL AI395202 [TTTCATCAAAACCTCCTCATAAACTGTATACCCTACAAATCTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTAGTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTAAAGCTAACTTACCACAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9515#0 CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGC 60
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 TCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAA 120
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 GTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTA 180
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 TCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCT 240
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 GTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCC 300
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 AAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGAC 360
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 AGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTT 420
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 ATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGT 480
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 AGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGT 540
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 CAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCT 600
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 AATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTA 660
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 ATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACA 720
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 TGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATC 780
consensus_9515#1 ------------------------------------------------------------
consensus_9515#0 AAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACA 840
consensus_9515#1 ----------------------TTTCATCAAAACCTC-CTCATAAACTGTATACCCTACA 37
********** ** * *********************
consensus_9515#0 AATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACAC 900
consensus_9515#1 AAT-CTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACAC 96
*** ****************** *************************************
consensus_9515#0 CAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAAT 960
consensus_9515#1 CAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAAT 156
************************************************************
consensus_9515#0 ATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCAT 1020
consensus_9515#1 ATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCAT 216
***** ******************************************************
consensus_9515#0 ACACTCTATAATATATTTACGTTTCCTCATGAAAAAAAAAAAAAAAAAAAA--------- 1071
consensus_9515#1 ACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTA 276
********************************* * * * * ***
consensus_9515#0 ------------------------------------------------------------
consensus_9515#1 GTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTA 336
consensus_9515#0 -------------------------------
consensus_9515#1 AAGCTAACTTACCACAAAAAAAAAAAAAAAA 367
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||