|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1537 fasta sequence
[TTCGATAACCACTATGAATACGCAGAGTTCGTTACTTAATCTAAAAGGTTGTAATGGTTCTCAAAGTTTATCTGGAGATAATCAACATTCTAATCATTTTCAGTCTCACTTACTGAATGGGACTTATTTTGACAGTGCTCAAACGAATGGCTGTGAGGATGTAATTTCTGGTGATGCTTCTGCTTGTAATGGCAACTCAAGCAATCAGTGTGCACTAAATAATGACTCAAGAATGTTAACAACTCCATTTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT-CAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAATTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACATCAGCCCAACTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACCAAATTCACAGTCATATTCGGTAAACAACTTTAATTTTATCCATGATTTAGATCAGTTATGTTTGAGCTCGTCCTGTGATAAAGATGCTGCTACCAATGTTACTACCACGATATGCACCACATTGAATAACTGTGTAACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAACGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGCTAATAATGATCCCATATCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGCGAAGTTCATCATTTTTTCCTGAAAATTTAAACGAATACACCGGTTCGATTGGGATTAATAATGGTAGTAATAATGGTAATAAT]
[+] EMBL CD178520 [TTCGATAACCACTATGAATACGCAGAGTTCGTTACTTAATCTAAAAGGTTGTAATGGTTCTCAAAGTTTATCTGGAGATAATCAACATTCTAATCATTTTCAGTCTCACTTACTGAATGGGACTTATTTTGACAGTGCTCAAACGAATGGCTGTGAGGATGTAATTTCTGGTGATGCTTCTGCTTGTAATGGCAACTCAAGCAATCAGTGTGCACTAAATAATGACTCAAGAATGTTAACAACTCCATTTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT CAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAA ]
[+] EMBL CD164991 [ TTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGTTTCGACCTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTATNCATTTG ]
[+] EMBL CD164988 [ TTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTAGGCTCTAGTTCCACACTANATAATATAATGAATCCGTCATCACCTAGTCGTAAT ]
[-] EMBL CD189891 [ ATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT CAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAATTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACATCAGCCCAACTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACT ]
[+] EMBL CD067498 [ TTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT CAATTGTTCAAATCGTGTTATAAGTAGTCGTACATTAGATAATTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACATCAGCCCAACTATCTTGCTTCATGACCG TTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACCAAATTCACAGTCATATTCG ]
[+] EMBL CD164560 [ ATGGTGACATCAGCCCAGCTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACCAAATTCACAGTCATATTCGGTAAACAACTTTAATTTTATCCATGATTTAGATCAGTTATGTTTGAGCTCGTCCTGTGATAAAGATGCTGCTACCAATGTTACTACCACGATATGCACCACATTGAATAACTGTGTAACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAACGAATCTGTCTTCAGTC ]
[+] EMBL CD132063 [ ACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAACGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGGCTCAAGCTAATA ]
[-] EMBL CD197661 [ ACACATGACCTCAACGAAAACGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACCTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGCTAATAATGATCCCATAT ]
[+] EMBL CD163324 [ CTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGCTAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGCGAAGTTCATCATTTTTTCCTGAAAATTTAAACGAATACACCGGTTCGATTGGGATTAATAATGGTAGTAATAATGGTAATAAT]
consensusID : consensus_9547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[ATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCATGCAATCCAATTCGTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGATAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGAGAAGTTCATCATTTTTTCTTGATTCCCACCTTG]
[-] EMBL CD067185 [ATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCATGCAATCCAATTCGTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGATAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGAGAAGTTCATCATTTTTTCTTGATTCCCACCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9547#0 TTCGATAACCACTATGAATACGCAGAGTTCGTTACTTAATCTAAAAGGTTGTAATGGTTC 60
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TCAAAGTTTATCTGGAGATAATCAACATTCTAATCATTTTCAGTCTCACTTACTGAATGG 120
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 GACTTATTTTGACAGTGCTCAAACGAATGGCTGTGAGGATGTAATTTCTGGTGATGCTTC 180
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TGCTTGTAATGGCAACTCAAGCAATCAGTGTGCACTAAATAATGACTCAAGAATGTTAAC 240
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 AACTCCATTTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGA 300
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 CGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATC 360
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGA 420
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 CATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACT 480
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAG 540
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TCGTAATGGCAATTCTATCAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAA 600
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACAT 660
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 CAGCCCAACTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCT 720
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 AACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGC 780
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACC 840
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 AAATTCACAGTCATATTCGGTAAACAACTTTAATTTTATCCATGATTTAGATCAGTTATG 900
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TTTGAGCTCGTCCTGTGATAAAGATGCTGCTACCAATGTTACTACCACGATATGCACCAC 960
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 ATTGAATAACTGTGTAACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAA 1020
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 CGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTC 1080
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 ATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGG 1140
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 TGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGG 1200
consensus_9547#1 ------------------------------------------------------------
consensus_9547#0 ATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCA 1260
consensus_9547#1 -------ATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCA 53
*****************************************************
consensus_9547#0 AGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAG 1320
consensus_9547#1 AGCATGCAATCCAATTCGTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAG 113
*** ************* ******************************************
consensus_9547#0 TTTCTTTTGGCCTCAAGCTAATAATGATCCCATATCGATTTGTTGTTCATCAAATAACAT 1380
consensus_9547#1 TTTCTTTTGGCCTCAAGATAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACAT 173
***************** *********** *** *************************
consensus_9547#0 GGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAG 1440
consensus_9547#1 GGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAG 233
************************************************************
consensus_9547#0 TGATGCTGCTACGCGAAGTTCATCATTTTTTCCTGAAAATTTAAACGAATACACCGGTTC 1500
consensus_9547#1 TGATGCTGCTACGAGAAGTTCATCATTTTTTCTTGATTCCCACCTTG------------- 280
************* ****************** *** *
consensus_9547#0 GATTGGGATTAATAATGGTAGTAATAATGGTAATAAT 1537
consensus_9547#1 -------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||