cluster # 9588

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Schistosoma mansoni
cluster # 9588 cluster # 9588 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9588#0 length = 584 sequences # 4
consensus_9588#1 length = 507 sequences # 2

consensus_9588#2 length = 374 sequences # 3
consensus_9588#3 length = 341 sequences # 1

consensusID : consensus_9588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 584
fasta sequence

                              [CGAGGCCAAAGTGGAAATGGCTCCCGTTTCATCAGTTAACAAAGAGACTGTTAGTGAACTTAACCCAACTCAAAAAGTTATAACTGCTCCACCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGG]

[+] EMBL CD084391             [CGAGGCCAAAGTGGAAATGGCTCCCGTTTCATCAGTTAACAAAGAGACTGTTAGTGAACTTAACCCAACTCAAAAAGTTATAACTGCTCCACCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACT                                                                                  ]
[+] EMBL AI976088             [                                                                                                                                    ACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATCTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGG]
[+] EMBL CD164824             [                                                                                                                                                         AGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAATACAACTACAAATGATCAAGTCTATAAAAAGAAA                                                                                                                               ]
[+] EMBL CD164889             [                                                                                                                                                         AGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAA                                                                                                                               ]




>consensus_9588#0
CGAGGCCAAAGTGGAAATGGCTCCCGTTTCATCAGTTAACAAAGAGACTGTTAGTGAACT
TAACCCAACTCAAAAAGTTATAACTGCTCCACCACAAATGGCTGGACCAAACGAGTTAGC
GGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGA
AGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGT
CCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACC
AGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGC
GAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTAC
CAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGG
AGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAGTAAATATGTTGGTAATCG
TCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGG

consensusID : consensus_9588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence

                              [CAACAGTACTACCACCAGTACCGCCTACAATTTATCGTTGTACCAGTACAACTACAAATGATCAAGTCCATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTTTTTATTTGGGAAATGAAGTAACAGATGACACTCTAGCACGAGCGTTTAACCGCTACCCTTCTTTTCAAAAAGCAAAAGTTGTTCGAGACAAACGTACCAGTAAATCTCGTGGTTATGGTTTCGTTAGCTTTTCTGATCCTGGAGATTTCACTCGCGCCATGCGAGAAATGAATGGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGGAAGTCCATAGAAAAAAGGAGAAAGAAAAACGAAAACTTGGTTTAAAGAACTGATTTTTTTCACCAAAGCTCATTAAATTTTTCTGTGAATAAAAAAAAAAAAAAA]

[-] EMBL CD149113             [CAACAGTACTACCACCAGTACCGCCTACAATTTATCGTTGTACCAGTACAACTACAAATGATCAAGTCCATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTTTTTATTTGGGA                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AI395362             [                                                            ATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGACCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTGGGGATTTGGGAAATGAAGTAACAGATGACACTCTAGCACGAGCGTTTAACCGCTACCCTTCTTTTCAAAAAGCAAAAGTTGTTCGAGACAAACGTACCAGTAAATCTCGTGGTTATGGTTTCGTTAGCTTTTCTGATCCTGGAGATTTCACTCGCGCCATGCGAGAAATGAATGGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGGAAGTCCATAGAAAAAAGGAGAAAGAAAAACGAAAACTTGGTTTAAAGAACTGATTTTTTTCACCAAAGCTCATTAAATTTTTCTGTGAATAAAAAAAAAAAAAAA]




>consensus_9588#1
CAACAGTACTACCACCAGTACCGCCTACAATTTATCGTTGTACCAGTACAACTACAAATG
ATCAAGTCCATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACC
CGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTTTTTATTTGGGAAATG
AAGTAACAGATGACACTCTAGCACGAGCGTTTAACCGCTACCCTTCTTTTCAAAAAGCAA
AAGTTGTTCGAGACAAACGTACCAGTAAATCTCGTGGTTATGGTTTCGTTAGCTTTTCTG
ATCCTGGAGATTTCACTCGCGCCATGCGAGAAATGAATGGTAAATATGTTGGTAATCGTC
CAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGGAAGTCCATAGAAAAAAGG
AGAAAGAAAAACGAAAACTTGGTTTAAAGAACTGATTTTTTTCACCAAAGCTCATTAAAT
TTTTCTGTGAATAAAAAAAAAAAAAAA

consensusID : consensus_9588#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 374
fasta sequence

                              [ATTTTGAGGCTTTGTATTTCAAAAGTAGGAAAATATTCACAGAAAAATTTAATGAGCTTTGGTGAAAAAAATCAGTTCTTTAAACCAAGTTTTCGTTTTTCTTTCTCCTTTTTTTCTATGGACTTCCAGTTGACGATTGCGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTTTTTGAAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAGAGTGTCATCTGTTACTTCATTTCCCAAATCCCCACAAAAAAAAC]

[+] EMBL CD134490             [ATTTTGAGGCTTTGTATTTCAAAAGTAGGAAAATATTCACAGAAAAATTTAATGAGCTTTGGTGAAAAAAATCAGTTCTTTAAACCAAGTTTTCGTTTTTCTTTCTCCTTTTTTTCTATGGACTTCCAGTTGACGATTGCGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTT                                                                                       ]
[-] EMBL CD080282             [                                                                                                                             CCAGTTGACGATTACGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTTTTTGAAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAGAGTGTCATCTGTTACTTCATTTCCCAAATCCCCACAAAAAAAAC]
[+] EMBL CD074200             [                                                                                                                              CAGTTGACGATTTTTCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTTTTTGAAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAAAGTGTCATCTGTTACTTCATTTCCCAAATCCCCACAAAAAAAA ]




>consensus_9588#2
ATTTTGAGGCTTTGTATTTCAAAAGTAGGAAAATATTCACAGAAAAATTTAATGAGCTTT
GGTGAAAAAAATCAGTTCTTTAAACCAAGTTTTCGTTTTTCTTTCTCCTTTTTTTCTATG
GACTTCCAGTTGACGATTGCGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAAC
ATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAAC
GAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTTTTTGAAA
AGAAGGGTAGCGGTTAAACGCTCGTGCTAGAGTGTCATCTGTTACTTCATTTCCCAAATC
CCCACAAAAAAAAC

consensusID : consensus_9588#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CGCGGCAAGAATTCGTTTCGAGGCCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCAGGGGCCAGA]

[+] EMBL CD077719             [CGCGGCAAGAATTCGTTTCGAGGCCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCAGGGGCCAGA]




>consensus_9588#3
CGCGGCAAGAATTCGTTTCGAGGCCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAG
CTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATG
ATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGC
CAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTA
CACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAG
TAACACAAACAACAGTACTACCACCAGTACCAGGGGCCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9588#0      ---CGAGGCCAAAGTGGAAATGGCTCCCGTTTCATCAGTTAACAAAGAGACTGTTAGTGA 57
consensus_9588#3      ------------------------------------------------------------
consensus_9588#1      CAACAGTACTACCACCAGTACCGCCTACAATTTATCGTTGTACCAGTACAACTACAAATG 60
consensus_9588#2      ------------------------------------------------------------
                                                                                  

consensus_9588#0      ACTTAACCCAACTCAAAAAGTTATAACTGCTCCACCACAAATGGCTGGACCAAACGAGTT 117
consensus_9588#3      -----------CGCGGCAAGAATTCGTTTCGAGGCCACAAATGGCTGGACCAAACGAGTT 49
consensus_9588#1      ATCAAGTCCATAAAAAGAAAAAGTATATTCG----CACAGCTGCTGGAGCCATTTGGGAA 116
consensus_9588#2      ---------------------------------------------------ATTTTG--A 7
                                                                         *        

consensus_9588#0      AGC--GGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAA 175
consensus_9588#3      AGC--GGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAA 107
consensus_9588#1      GACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTTTTTATTTGGGA 176
consensus_9588#2      GGC---TTTGTATTTCAAAAGTAGGAAAATATTCACAGAAAAATTTAATGAGCTTTGGTG 64
                        *           * **                 *  *         *        *  

consensus_9588#0      GACGAAGACGATGATGTTACTCGAGCATTGCTAGCTG-CGGCAGCGGGAGTTACTTATAC 234
consensus_9588#3      GACGAAGACGATGATGTTACTCGAGCATTGCTAGCTG-CGGCAGCGGGAGTTACTTATAC 166
consensus_9588#1      AATGAAGTAACAGATGACACTCTAGCACGAGCGTTTAACCGCTACCCTTCTTTTCAAAAA 236
consensus_9588#2      AAAAAAATCAGTTCTTTAAACCAAGTTTT--CGTTTTTCTTTCTCCTTTTTTTCTATGGA 122
                       *  **        *   *  * **          *  *     *     **        

consensus_9588#0      TCGAGTCCAG---GGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCC 291
consensus_9588#3      TCGAGTCCAG---GGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCC 223
consensus_9588#1      GCAAAAGTTGTTCGAGACAAACGTACCAGTAAATCTCGTGGTTATGGTTTCGTTAGCTTT 296
consensus_9588#2      CTTCCAGTTG------ACGATTGCGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTAC 176
                               *       *    *    *       *  *                  *  

consensus_9588#0      GCTAACACCAGTTGTTACACAAACGA---GTAAAAAATCAAAGGTAAACGATCTCAATAC 348
consensus_9588#3      GCTAACACCAGTTGTTACACAAACGA---GTAAAAAATCAAAGGTAAACGATCTCAATAC 280
consensus_9588#1      TCTGATCCTGGAGATTTCACTCGCGCCATGCGAGAAATGAATGGTAAAT-ATGTTGGT-- 353
consensus_9588#2      CAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGG---ATCAGAAA 233
                          *         **       **    *    *    **     *      *      

consensus_9588#0      AGATGCGGAAGCGAAC-AAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAA 407
consensus_9588#3      AGATGCGGAAGCGAAC-AAAGTAACACAAACAACAGTACTACCACCAGTACCAGGGGCCA 339
consensus_9588#1      AATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGGAAGTCCATAGA 413
consensus_9588#2      AGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTT 293
                      *       ** * *     *  *     *             *      *          

consensus_9588#0      TTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTC 467
consensus_9588#3      GA---------------------------------------------------------- 341
consensus_9588#1      AAAA----------AGGAGAAAGAAAAACGAAAACTTGGTTTAAAGAACTGATTTTTTTC 463
consensus_9588#2      TTTG----------AAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAGAGTGTCATCTGTT 343
                                                                                  

consensus_9588#0      GCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAGTAAAT 527
consensus_9588#3      ------------------------------------------------------------
consensus_9588#1      ACCAAAGCTCATTAAATTTTTCTGTGAATAAAAAAAAAAAAAAA---------------- 507
consensus_9588#2      ACTTCATTTCCCAAA---TCCCCACAAAAAAAAC-------------------------- 374
                                                                                  

consensus_9588#0      ATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGG 584
consensus_9588#3      ---------------------------------------------------------
consensus_9588#1      ---------------------------------------------------------
consensus_9588#2      ---------------------------------------------------------