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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_959#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[GGCACCACACATTCTACAACGAGTTGCGAGTTGGCTCCAGAGGNCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTNNNNNNNNNNNNGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGNNNNNNNNCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTTCGAGCAGGAGATGGGTACTGCAGCTTCGAGTTCTGCATTGGAGAAGAGTTACGAACTTCCAGATGGTCAAGTTATCACGATTGGTAATGAGCGATAGCTTTTTGGGAATGGAAGCATCGGGAATTCATGAGACTACATACAATTCGATTATGAAGTGTGATGTGGATATCCGTAAAGATCTGTATTCGAACACCGTGTTGTCTGGTGGAAGTACGATGTATCCTGGTATTGCTGAC]
[+] EMBL CD080892 [GGCACCACACATTCTACAACGAGTTGCGAGTTGGCTCCAGAGGNCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTNNNNNNNNNNNNGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGNNNNNNNNCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTTCGAGCAGGAGATGGGTACTGCAGCTTCGAGTTCTGCATTGGAGAAGAGTTACGAACTTCCAGATGGTCAAGTTATCACGATTGGTAATGAGCGATAGCTTTTTGGGAATGGAAGCATCGGGAATTCATGAGACTACATACAATTCGATTATGAAGTGTGATGTGGATATCCGTAAAGATCTGTATTCGAACACCGTGTTGTCTGGTGGAAGTACGATGTATCCTGGTATTGCTGAC]
consensusID : consensus_959#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[TTTTTCCAACCTAGCTTTTGGGGATTGGAAGCATCGGGAATCATGAGACTACATACAATCGATTATGAAAGTGTGATGTGGATATCGTAAAAGATCTGTATTCGAACACCGTGTTGTCTGGTTGGAAGTACGATGTATCCTGGTATTGCTGACCGTATGCAGAAGGAGATTAGTGCTCTAGCCCCCAGTACAATGAAGATAAAGATCGTTGCACCACCTGAACGGAAGTACTCAGTATGGATTGGTGGTTCTATTTTGGCTTCATTATCAACATTCCAACAGATGTGGATTTCTAAACAGGAGTATGATGAATCTGGTCCCGGTATTGTTCATCGCAAATGCTTTTAGTTTTTGTGTGTAATAAATAGATCCTTTAATTAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395186 [TTTTTCCAACCTAGCTTTTGGGGATTGGAAGCATCGGGAATCATGAGACTACATACAATCGATTATGAAAGTGTGATGTGGATATCGTAAAAGATCTGTATTCGAACACCGTGTTGTCTGGTTGGAAGTACGATGTATCCTGGTATTGCTGACCGTATGCAGAAGGAGATTAGTGCTCTAGCCCCCAGTACAATGAAGATAAAGATCGTTGCACCACCTGAACGGAAGTACTCAGTATGGATTGGTGGTTCTATTTTGGCTTCATTATCAACATTCCAACAGATGTGGATTTCTAAACAGGAGTATGATGAATCTGGTCCCGGTATTGTTCATCGCAAATGCTTTTAGTTTTTGTGTGTAATAAATAGATCCTTTAATTAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_959#0 GGCACCACACATTCTACAACGAGTTGCGAGTTGGCTCCAGAGGNCCACTGAACCCGAAAG 60
consensus_959#1 ------------------------------------------------------------
consensus_959#0 CCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATG 120
consensus_959#1 ----------------------------------------------------------TT 2
*
consensus_959#0 TTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGG--TCGTACAACTGGTATAGTGTT 178
consensus_959#1 TTTCCAACCTAGCTTT-TGGGGATTGGAAGCATCGGGAATCATGAGACTA-CATACAATC 60
** * * * ** * * * * ** * ***** ** ** * *** *** *
consensus_959#0 GGACTNNNNNNNNNNNNGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTC 238
consensus_959#1 GATTATGAAAGTGTGATGTGGATATCGTAAA--AGATCTGTAT---TCGAACACCGTGTT 115
* *** * * ***** * * ** * *
consensus_959#0 ATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCT 298
consensus_959#1 GTCTGGTTGGAAGTACGATGTATCCTGGTA------TTGCTGACCGTATGCAGAAGGAGA 169
* * ** ** * * ****** ** * *** **** ****
consensus_959#0 TGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGNNNNNNNNCGAGATATAA 358
consensus_959#1 TTAGTGCTCTAGCCCCCAGTACAATGAAGA-TAAAGATCGTTGCACCACCTGA-ACGGAA 227
* * ** ** **** * * * * *** *** ** * **
consensus_959#0 AGGAGAAGCTTTGTTACGTTGCTTTGGATTTCGAGCAGGAGATGGGTACTGCAGCTTCGA 418
consensus_959#1 GTACTCAGTATGGATTGGTGGTTCT--ATTTTGGCTTCATTATCAACATTCCAACA--GA 283
** * * * ** * * * **** * ** * * ** * **
consensus_959#0 GTTCTGCATTGGAGAAGAGTTACGAACTTCCAGATGGTCAAGTTATCACGATTGGTAATG 478
consensus_959#1 TGTGGATTTCTAAACAGGAGTATGA---TGAATCTGGTCCCGGTATTGTTCATCGCAAAT 340
* * * ** ** ** * * ***** * *** * * **
consensus_959#0 AGCGATAGCTTTT-TGGG-AATGGAAGCATCGGGAATTCATGAGACTACATACAATTCGA 536
consensus_959#1 GCTTTTAGTTTTTGTGTGTAATAAATAGATCCTTTAATTAAAAAAAAAAAAAAAAAAAAA 400
*** **** ** * *** * *** * * * * * * * * ** *
consensus_959#0 TTATGAAGTGTGATGTGGATATCCGTAAAGATCTGTATTCGAACACCGTGTTGTCTGGTG 596
consensus_959#1 AAA--------------------------------------------------------- 403
*
consensus_959#0 GAAGTACGATGTATCCTGGTATTGCTGAC 625
consensus_959#1 -----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||