|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1675 fasta sequence
[TTTCCTGGTGGTAAAGCAAAATGTCCGGATAGTTCAACATGTTGTAAATTATCTAGTGGGAAATATGCATGTTGTCCAATACCAAATGCTATTTGTTGTGCGGATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGC-CCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTG-AAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATATAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGGACAATGCTGTCTTTCTAATAAATTTGGTTATACTTGTACACCGAATAAGTCCATATGTTGTGGATCTAATATGGATACTTATTGTCCAATATACAAAGATTGTTCTTTAGATGGTAAATTCTGTATTGATAAGTATTAGTTTCACTGTTATCATAACTATTGATAGTTGGATAATTAATATATAATGGTTAATTCATCATTCACTATTATTATCATTATGTGTGTTGTGTGTGTGTGTGTTTATGAATTACTACACATCTTGCCATTATTATCAATTCGGATTAGTAACCTCTCGTATCCATGTTACTTCTTT-TCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCAATA-TTTTCTATTTTGTTCATGTTATGTTTCCATTTGTTTATCGAAATAATTTTCCTCGGATACTACTTATATTGAGTGTTACTTTTCTTTTTGTTTTACCAATTGGTTTGTAATTGGTTTTTAATCGTCATGGTAACAAAAAATTTAATGAATAAATGAATGAAGTTGATTTCCTATATTCAATTGACTAGTCCCGGTTAGAATAAAATATCCATCCTAATAAATTCATAACTAATTATAATTCCTTTAATTTATTATTCTTGATTCTATTTTACACGTTAATGTTTTCTTCATTGAATAATTAACAACATTTCATAGATTATCAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAG]
[+] EMBL CD127709 [TTTCCTGGTGGTAAAGCAAAATGTCCGGATAGTTCAACATGTTGTAAATTATCTAGTGGGAAATATGCATGTTGTCCAATACCAAATGCTATTTGTTGTGCGGATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGC CCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTG ]
[+] EMBL CD168286 [ GACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGC CCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGCGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATCCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTT ]
[-] EMBL CD129425 [ TTGCNNCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTG AAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATATAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATTATCGACGTCTTAAACGACAATTACA ]
[-] EMBL CD119050 [ GTTTGTGATTTGGATACAAGACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAATTGTGAAAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTT ]
[+] EMBL CD077707 [ CGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTG ]
[+] EMBL CD080251 [ GTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTG AAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATATAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGGACAATGCTGTCTTTCTAATAAATTTGGTTATACTTGTACACCGAATAAGTCCATATGTTGTGGATCTAATATGGATACTTATTGTCCAATATACAAAGATTGTTCTTTAGATGGTAAATTCTGTATTGATAAGTATTAGTTTCACTGTTATCATAACTATTGATAGTTGGATAATTAATATATAATGGTTAATTCATCATTCACTATTATTATCATTATGTGTGTTGTGTGTGTGTGTGTTTATGAATTACTACACATCTTGCCATTATTATCAATTCGGATTAGTAACCTCTCGTATCCATGTTACTTCTTT TCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCAATA TTTTCTATTTTGTTCATGTTATGTTTCCATTTGTTTATCGAAATAATTTTCCTCG ]
[-] EMBL AI067837 [ ATTATTATCAATTCGGATTAGTAACCTCTCGTATCCATGTTACTTCTTTCTCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCAATATTTTTGTATTTTGTTCATGTTATGTTTCCATTTGTTTATCG AATAAATTTCCTTCGATACTACTTATATTGAGTGTTACTTTTCTTTTTGTTTTACCAATTGGTTTGTAATTGGTTTTTAATCGTCATGGTAACAAAAAATTTAATGAATAAATGAATGAAGTTGATTTCCTATATTCAATTGACTAGTCCCGGTTAGAATAAAATATCCATCCTAATAAATTCATAACTAATTATAATTCCTTTAATTTATTATTCTTGATTCTATTTTACACGTTAATGTTTTCTTCATTGAATAATTAACAACATTTCATAGATTATCAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAG]
consensusID : consensus_9605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 304 fasta sequence
[TGCCTTCACACATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGAT]
[+] EMBL CD169906 [TGCCTTCACACATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGAT]
[+] EMBL CD181145 [ GTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCAC ]
consensusID : consensus_9605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[CTAATCATTGAAAAAAATTAGCTGGTATTGTCCTAGTCCGAGATTATCTACAAAATGAATAGATTTCATACATTCTCTATAGCTTTTTTACAGTTTACTTAGGATCTTATTACAATAACTCATGTCGGTACTTGGATTATACTAAAATTGCAATATTTCTAATTCACCCTCCAAATTCTTAATAAATACATATCAGTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGAACAATGCTGTCTTTCTAATAAATTTGGTT]
[-] EMBL CD194351 [CTAATCATTGAAAAAAATTAGCTGGTATTGTCCTAGTCCGAGATTATCTACAAAATGAATAGATTTCATACATTCTCTATAGCTTTTTTACAGTTTACTTAGGATCTTATTACAATAACTCATGTCGGTACTTGGATTATACTAAAATTGCAATATTTCTAATTCACCCTCCAAATTCTTAATAAATACATATCAGTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGAACAATGCTGTCTTTCTAATAAATTTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9605#0 TTTCCTGGTGGTAAAGCAAAATGTCCGGATAGTTCAACATGTTGTAAATTATCTAGTGGG 60
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AAATATGCATGTTGTCCAATACCAAATGCTATTTGTTGTGCGGATGATATTCATTGTTGT 120
consensus_9605#1 --------------------------------TGCCTTCACACATGATATTCATTGTTGT 28
consensus_9605#2 -----------------------------CTAATCATTGAAAAAAATTAGCTGGTATTGT 31
* * ** * ****
consensus_9605#0 CCA---CCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGAT 177
consensus_9605#1 CCA---CCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGAT 85
consensus_9605#2 CCTAGTCCGAGATTATCTACAAAATGAATAGATTTCATACATTCTCTATAGCTTTTTTAC 91
** ** ** ** * * * * * * * * * * * *
consensus_9605#0 CATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTA-C 236
consensus_9605#1 CATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTA-C 144
consensus_9605#2 AGTTTACTTAGGATCTTATTA--CAATAACTCATGTCGGTA-CTTGGATTATACTAAAAT 148
** * ** * * * ** * *** * * ** ** * * * ** * * *
consensus_9605#0 TGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTG 296
consensus_9605#1 TGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTG 204
consensus_9605#2 TGCAATATTTCTAATTCACCCTCCAAATTCTTAATAAATACATATCAGTGTTCG---TCA 205
** * ** * * ** * * *** * * * ** ** *
consensus_9605#0 TTGTCGACTGCCTGATAAATCATGGGGT-TGTTGTCCACTGAAAAATGGTGTTTGTTGCG 355
consensus_9605#1 TTGTCGACTGCCTGATAAATCATGGGGT-TGTTGTCCACTGAAAAATGGTGTTTGTTGCG 263
consensus_9605#2 TTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATT-ATTGTG 264
** ***** * * * * ** * * * **** ** ** *** *
consensus_9605#0 GTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCA 415
consensus_9605#1 GTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGAT------------------- 304
consensus_9605#2 GTAAATCTGAACAATGCTGTCTTTCTAATAAATTTGGTT--------------------- 303
** * * ** ** **** ** * * ** **
consensus_9605#0 TTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGC 475
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 ACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTA 535
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 CTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTT 595
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 GTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTA 655
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 TTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTGAAA 715
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGA 775
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 ATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATA 835
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 TAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATT 895
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 ATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTA 955
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AATCTGGACAATGCTGTCTTTCTAATAAATTTGGTTATACTTGTACACCGAATAAGTCCA 1015
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 TATGTTGTGGATCTAATATGGATACTTATTGTCCAATATACAAAGATTGTTCTTTAGATG 1075
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 GTAAATTCTGTATTGATAAGTATTAGTTTCACTGTTATCATAACTATTGATAGTTGGATA 1135
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 ATTAATATATAATGGTTAATTCATCATTCACTATTATTATCATTATGTGTGTTGTGTGTG 1195
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 TGTGTGTTTATGAATTACTACACATCTTGCCATTATTATCAATTCGGATTAGTAACCTCT 1255
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 CGTATCCATGTTACTTCTTTTCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCA 1315
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 ATATTTTCTATTTTGTTCATGTTATGTTTCCATTTGTTTATCGAAATAATTTTCCTCGGA 1375
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 TACTACTTATATTGAGTGTTACTTTTCTTTTTGTTTTACCAATTGGTTTGTAATTGGTTT 1435
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 TTAATCGTCATGGTAACAAAAAATTTAATGAATAAATGAATGAAGTTGATTTCCTATATT 1495
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 CAATTGACTAGTCCCGGTTAGAATAAAATATCCATCCTAATAAATTCATAACTAATTATA 1555
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 ATTCCTTTAATTTATTATTCTTGATTCTATTTTACACGTTAATGTTTTCTTCATTGAATA 1615
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 ATTAACAACATTTCATAGATTATCAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAG 1675
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||