cluster # 9611

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Schistosoma mansoni
cluster # 9611 cluster # 9611 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9611#0 length = 1047 sequences # 7

consensus_9611#1 length = 285 sequences # 3

consensusID : consensus_9611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1047
fasta sequence

                              [TATTTGACTTTCAGCGATATGTGCAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTTTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAATTGTTCTCTTCTGACTACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACTGCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATAACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTGAATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCCGATCTACGTGTACCAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATCGCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCTACATCTGCCAGTCAGCAAAATGGGATCCCTTTAATTCTTCCAGTAGTAACAAGCAATGGAAGTGTTAATCATCAAGATGCTTCATCACCAAACAATAATGATAATAATCATGGAGATCGAAATTCAACCGTAAATAATAATCGACGTC------AAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGATGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGACTGATTCAACTNTAGCTCAATTAGCTGTACATTGTCCACGTTTAAACACACTGGTATTATCACACTGTGATCAAGTGACTGATGAAGGTATTG]

[+] EMBL CD179938             [TATTTGACTTTCAGCGATATGTGCAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTTTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAATTGTTCTCTTCTGACTACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD181006             [                                                                                                                GGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD188547             [                                                                                                                                                                                                     AGTTATTTGGGAAAAAATTGTTCTCTTCTGACTACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACTGCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATAACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD188056             [                                                                                                                                                                                                                                              CCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACTGCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATAACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTGAATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCCGATCTACGTGTACCAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATCGCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCT                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD123194             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTGAATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCCGATCTACGTGTACTAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATCGCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCTACATCTGCCAGTCAGCAAAATGGGATCCCTTTAATTCTTCCAGTAGTAACAAGCAATGGAAGTGTTAATCATCAAGATGCTTCATCACCAAACAATAATGATAATAATCATGGAGATCGAAATTCAACCGTAAATAATAATCGACGTCAAAAAAAAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGGTGTGTTAGCTTAACAACTTTAGAGGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGACTGATTCAACTNTA                                                                               ]
[+] EMBL CD202944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATAATGATAATAATCATGGAGATCGAAATTCAACCGTAAATAATAATCGACGTC      AAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGATGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCACACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGACTGATTCAACTTTAGCTCAATTAGCTGTACATTGTCCACGTTTAAACACACTGGTATTATCACACTGTGATCAAGTGACTGATGAAGGTATTG]
[-] EMBL CD181496             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATCGAAATTCAACCGTAAATAATAATCGACGTC      AAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGAATGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGAC                                                                                            ]




>consensus_9611#0
TATTTGACTTTCAGCGATATGTGCAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTC
GCGGTTTTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAA
AATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACT
TGACGAATGGAACTTGCAGTTATTTGGGAAAAAATTGTTCTCTTCTGACTACTTTGTCCC
TGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATC
TAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACTGCTATCGCCA
GAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATAACAAGTCGTG
GTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTGAATTACTGTG
GACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCCGATCTACGTG
TACCAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATCGCTGGCACAT
TATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCTACATCTGCCAGTCAGCAAAATG
GGATCCCTTTAATTCTTCCAGTAGTAACAAGCAATGGAAGTGTTAATCATCAAGATGCTT
CATCACCAAACAATAATGATAATAATCATGGAGATCGAAATTCAACCGTAAATAATAATC
GACGTCAAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGATGTGTTAGCT
TAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCG
CACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGACTGATT
CAACTNTAGCTCAATTAGCTGTACATTGTCCACGTTTAAACACACTGGTATTATCACACT
GTGATCAAGTGACTGATGAAGGTATTG

consensusID : consensus_9611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 285
fasta sequence

                              [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCATGATGTCAAAACTTGACGAATGGAACTTGCAATTGTTTGGGAAAAAAT]

[+] EMBL CD117980             [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAATTGAAAAAATCGCCCAAAGAAGTCGCGGTTCTCTTCGTGAGTTGAAGCTGAAAGGTTGTCCAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCATGATGTCAAAACTTGACGAATGGAACTTGCAATTGTTTGGGAAAAAAT]
[+] EMBL CD117839             [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAAT                           ]
[+] EMBL CD118165             [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTG                                                         ]




>consensus_9611#1
GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAG
GTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCC
CAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGAT
GAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCATGA
TGTCAAAACTTGACGAATGGAACTTGCAATTGTTTGGGAAAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9611#0      ------------------------------------------------------------
consensus_9611#1      GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAG 60
                                                                                  

consensus_9611#0      ----TATTTGACTTTCAG------CGATATGTGCAGCCCAAAGTAGTTGAAAAAATCGCC 50
consensus_9611#1      GTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCC 120
                          * * *  * * **       * * **    **************************

consensus_9611#0      CAGAGAAGTCGCGGTTTTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGAT 110
consensus_9611#1      CAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGAT 180
                      **************** *******************************************

consensus_9611#0      GAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGA 170
consensus_9611#1      GAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCATGA 240
                      ********************************************************* **

consensus_9611#0      TGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAATTGTTCTCTTCTGACT 230
consensus_9611#1      TGTCAAAACTTGACGAATGGAACTTGCAATTGTTTGGGAAAAAAT--------------- 285
                      **************************** ** *************               

consensus_9611#0      ACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCG 290
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      TGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACT 350
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATA 410
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      ACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTG 470
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      AATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCC 530
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GATCTACGTGTACCAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATC 590
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCTACATCTGCCAGT 650
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      CAGCAAAATGGGATCCCTTTAATTCTTCCAGTAGTAACAAGCAATGGAAGTGTTAATCAT 710
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      CAAGATGCTTCATCACCAAACAATAATGATAATAATCATGGAGATCGAAATTCAACCGTA 770
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      AATAATAATCGACGTCAAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGA 830
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      TGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTA 890
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      TCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTA 950
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GTGACTGATTCAACTNTAGCTCAATTAGCTGTACATTGTCCACGTTTAAACACACTGGTA 1010
consensus_9611#1      ------------------------------------------------------------
                                                                                  

consensus_9611#0      TTATCACACTGTGATCAAGTGACTGATGAAGGTATTG 1047
consensus_9611#1      -------------------------------------