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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1308 fasta sequence
[TATATACAATTATTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTTTACAAGACGGACTGCGGCCTCTGAAGTTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAAACTTTGACGAGGATAGATCGCTTTTTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAG-AAACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCTAATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCACCGTTTACGTTTTCTGAAACCGCTTTAACAGAAGCAACCATTTGCACAGAATTTTGTGCTAGTTTTTGTGTTCCACCAGGAAACANACCAGGAAGCACACTCTGATGTA]
[+] EMBL CD074714 [TATATACAATTATTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTTTACAAGACGGACTGCGGCCTCTGAAGTTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAAACTTTGACGAGGATAGATCGCTTTTTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAG AAACTGGCTGT ]
[+] EMBL CD195048 [ ATGCCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAAAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAAACTGGCTGGTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGA ]
[+] EMBL CD169230 [ TGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCTAATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCACCGTTTACGTT ]
[+] EMBL CD117223 [ TGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGT ]
[+] EMBL CD146033 [ GTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCTAATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCACCGTTTACGTTTTCTGAAACCGCTTTAACAGAAGCAACCATTTGCACAGAATTTTGTGCTAGTTTTTGTGTTCCACCAGGAAACANACCAGGAAGCACACTCTGATGTA]
[+] EMBL CD117743 [ AGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGGTCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTT ]
[-] EMBL CD117037 [ GAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTC ]
[-] EMBL CD117075 [ GAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTC ]
[-] EMBL CD117040 [ GAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTC ]
consensusID : consensus_9617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[TTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAANNNNNNNNNNNNNNNNNNNNNNNNNTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAAACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGT]
[-] EMBL CD080880 [TTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAANNNNNNNNNNNNNNNNNNNNNNNNNTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAAACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9617#0 TATATACAATTATTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCA 60
consensus_9617#1 ------------TTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCA 48
************************************************
consensus_9617#0 CAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGG 120
consensus_9617#1 CAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGG 108
************************************************************
consensus_9617#0 TTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTTTACA 180
consensus_9617#1 TTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCT------ 162
******************************************************
consensus_9617#0 AGACGGACTGCGGCCTCTGAAGTTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTA 240
consensus_9617#1 ------------------------TCCATAATGAGATAGGCGTAAATAGATGGGGGTTTA 198
************************************
consensus_9617#0 CTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCC 300
consensus_9617#1 CTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCC 258
************************************************************
consensus_9617#0 TTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAAACTTTGACGAG 360
consensus_9617#1 TTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAANNNNNNNNNNN 318
*************************************************
consensus_9617#0 GATAGATCGCTTTTTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAG 420
consensus_9617#1 NNNNNNNNNNNNNNTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAG 378
**********************************************
consensus_9617#0 CGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGAT 480
consensus_9617#1 CGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGAT 438
************************************************************
consensus_9617#0 ATACATAGGCGCTTAGAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGA 540
consensus_9617#1 ATACATAGGCGCTTAGAATCATGATGGTTATG--------------------------GA 472
******************************** **
consensus_9617#0 TCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAA 600
consensus_9617#1 TCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAA 532
************************************************************
consensus_9617#0 -CTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTC 659
consensus_9617#1 ACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTC 592
***********************************************************
consensus_9617#0 AGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGG 719
consensus_9617#1 AGATAGT----------------------------------------------------- 599
*******
consensus_9617#0 TTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCC 779
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 ATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGG 839
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 TGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGA 899
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 GACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGC 959
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 ATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCG 1019
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 AAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGA 1079
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 TAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCT 1139
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 AATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCA 1199
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 CCGTTTACGTTTTCTGAAACCGCTTTAACAGAAGCAACCATTTGCACAGAATTTTGTGCT 1259
consensus_9617#1 ------------------------------------------------------------
consensus_9617#0 AGTTTTTGTGTTCCACCAGGAAACANACCAGGAAGCACACTCTGATGTA 1308
consensus_9617#1 -------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||