cluster # 9623

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9623 cluster # 9623 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9623#0 length = 369 sequences # 9

consensus_9623#1 length = 94 sequences # 1

consensusID : consensus_9623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 369
fasta sequence

                              [TTCTACGACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA--GCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAAACTTGTCGCGGCCGC]

[+] EMBL CD135258             [TTCTACGACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA  G                                                                                                                                           ]
[-] EMBL CD148447             [               TTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA  GCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATG                                                                                                        ]
[+] EMBL CD180707             [               TTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTTGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTA                                                                                                                                                   ]
[-] EMBL CD148445             [               TTGCTTGTAACGCGATCACCATGCCGCTCGATCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGAATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACATACAGCTGTAGTTTGTGCTGGATGTGACCGAATTCTATGTCACGGCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATG                                                                                                        ]
[+] EMBL CD141943             [               TTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA  GCCCACTGGTGGTAGAGCACGGCTGGCTGATG                                                                                                            ]
[+] EMBL CD135438             [                                           ggataGTGATTTGTTACATNCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGCCCCCTATGTCA  G                                                                                                                                           ]
[+] EMBL CD148906             [                                                         TACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA  CCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAAACTTGTCGCGGCCGC]
[+] EMBL CD148910             [                                                         TACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCTTGGATGTTAAGTGTTCAGGCTTGCT AAAATCCAGATTGTTTTCA TCATCCCCA AC GCTGTAATTTGTCCTGGATGTGACCGAATTCTATGTCA  GCCCACTGGTGGTAAAGCACGGCTGGCTGATGGATGCATTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAAACTTGTCGCGGCCGt]
[+] EMBL AA629492             [                                                                                                         cacgagCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA  GCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATG                                          ]




>consensus_9623#0
TTCTACGACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTAC
ATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAA
ATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTC
ATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCAGCCCACTGGTG
GTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTTCTTGTA
AATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAAACTTGT
CGCGGCCGC

consensusID : consensus_9623#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 94
fasta sequence

                              [GCGGTTCGCGTGCACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAAGAGCGAAA]

[+] EMBL CD135158             [GCGGTTCGCGTGCACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAAGAGCGAAA]




>consensus_9623#1
GCGGTTCGCGTGCACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACT
TGTTACATCCGTCTTTTCGAGAGGAAGAGCGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9623#0      -----TTCTACG-ACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACT 54
consensus_9623#1      GCGGTTCGCGTGCACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACT 60
                           *     * ***********************************************

consensus_9623#0      TGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCT 114
consensus_9623#1      TGTTACATCCGTCTTTTCGAGAGGAAGAGCGAAA-------------------------- 94
                      *************************  *******                          

consensus_9623#0      CACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTT 174
consensus_9623#1      ------------------------------------------------------------
                                                                                  

consensus_9623#0      TCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCAGCCCA 234
consensus_9623#1      ------------------------------------------------------------
                                                                                  

consensus_9623#0      CTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTT 294
consensus_9623#1      ------------------------------------------------------------
                                                                                  

consensus_9623#0      CTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAA 354
consensus_9623#1      ------------------------------------------------------------
                                                                                  

consensus_9623#0      ACTTGTCGCGGCCGC 369
consensus_9623#1      ---------------