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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1979 fasta sequence
[TATAATAATGAAACAGTCAATACTAATAATAGTAATAATAATAAGTTTAATTTTAATAGACCAAATGTTACTATATCAACGGATTGGAATTGGTGGCCATTTAATGTCCTTACCTATCTGTTTAATGCATCTCCTTCACAAAGATTTACCATGATGATTGCATATGCTATTTTAGGTTTTTTATTCCTATCAACAATACATCTATATCATCGATTAGCATTAATTGATTTACAAACTGGTCCAACTATACGTCGTGCTGGAATTCATCAGGAATCATCTACTACATCTAATTCAGAATTACCATAATTTAGAAGCACAATTAACTTATTTAACTCAACTTACTTCAAAAATGATTGAAACACTTGGTTATTTAACATCAGAATTAAATAGTTTCGTATTATATTCTAATCCAGAGAAATTTCACCAGATCAATCCACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAGTAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTTGTATTATTGTTGCATTTCATTTCAACGATCTTGTTTGTTGATCTTTCTTCTTTTGGTTCACAACTCATATAAACATTCCCCACTATCAGATCAAAACGCACATATACACACACACACACACAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCTTTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTACCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATGACTAGCGTTTGATCTGGATCAACTGGCTGGCAGTTAGTCCACTAGACTTGTTACGAACTTTATTTTCTTCGGATAGTTTGTTTCTAAATGACTTTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTCTCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAATACAAAACTTTACTACCACATTATTTTCATCATTACCACTACTACTACTATATATTGTGTCCCAAGTTTCTGTGTAATAAATTTTTTTTCTCTCTTGTTTACTACCATAATTTTTGTTCTTGTTAACTTTTTTTTTTTCGTTTGATTTCGGTATTTCATTTCTTCCCTCCTCTCATTTCTCTCACAATCTACAAGAAGAAACATTACAACGCATTCTCCCTTGTTTTATTCACCTTTCCAATTGAATCATGTGTTGTTACTGTTTGTTTGCTTCTTCTGCGCAAAATAACTATTCGTTCTTGTTTCGTTTAGTTCACCTTTTCCCATTGATGTTGACTTACATGTTATTATTATTATTATTATAAGTGATGATAATAATTGTAC]
[+] EMBL CD069585 [TATAATAATGAAACAGTCAATACTAATAATAGTAATAATAATAAGTTTAATTTTAATAGACCAAATGTTACTATATCAACGGATTGGAATTGGTGGCCATTTAATGTCCTTACCTATCTGTTTAATGCATCTCCTTCACAAAGATTTACCATGATGATTGCATATGCTATTTTAGGTTTTTTATTCCTATCAACAATACATCTATATCATCGATTAGCATTAATTGATTTACAAACTGGTCCAACTATACGTCGTGCTGGAATTCATCAGGAATCATCTACTACATCTAATTCAGAATTACCATAATTTAGAAGCACAATTAACTTATTTAACTCAACTTACTTCAAAAATGATTGAAACACTTGGTTATTTAACATCAGAATTAAATAGTTTCGTATTATATTCTAATCCAGAGAAATTTCACCAGATCAATCCACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAGTAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTT ]
[-] EMBL CD131679 [ CACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAGTAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTTGTATTATTGTTGCATTTCATTTCAACGATCTTGTTTGTTGATCTTTCTTCTTTTGGTTCACAACTCATATAAACATTCCCCACTATCAGATCAAAACGCACATATACACACACACACACACAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCTTTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTGCCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCT ]
[+] EMBL CD121215 [ ACACAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCTTTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAGTGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTACCACTCTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGNATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACAT ]
[-] EMBL CD121136 [ AAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTNTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCCCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTATCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATG ]
[-] EMBL CD121752 [ AAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTATCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATGACT ]
[-] EMBL CD121243 [ CCCTCATTACCCCTCTTATCCATGTTNTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTACCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATG ]
[-] EMBL AI975749 [ tAAATATACACTTCTTACAACCTCTCTTTTGGTTCATCATTTATGCAACAAAGAGTGAACTGTTTTGATATCTCTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTT ]
[-] EMBL AI975744 [ GCCTGGTATTCTACTCTATTAAATTACCCTTAAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGACCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATGACTAGCGTTTGATCTGGATCAACTGGCTGGCAGTTAGTCCACTAGACTTGTTACGAACTTTATTTTCTTCGGATAGTTTGTTTCTAAATGACTTTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTCTCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAAT ]
[-] EMBL AI067174 [ TTGTTTCTAAATGACTTTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTCTCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAATACAAAACTTTACTACCACATTATTTTCATCATTACCACTACTACTACTATATATTGTGTCCCAAGTTTCTGTGTAATAAATTTTTTTTCTCTCTTGTTTACTACCATAATTTTTGTTCTTGTTAACTTTTTTTTTTTCGTTTGATTTCGGTATTTCATTTCTTCCCTCCTCTCATTTCTCTCACAATCTACAAGAAGAAACATTACAACGCATTCTCCCTTGTTTTATTCACCTTTCCAATTGAATCATGTGTTGTTACTGTTTGTTTGCTTCTTCTGCGCAAAATAACTATTCGTTCTTGTTTCGTTTAGTTCACCTTTTCCCATTGATGTTGACTTACATGTTATTATTATTATTATTATAAGTGATGATAATAATTGTAC]
consensusID : consensus_9636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence
[GCAGAATTCGGTCCGAGGCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTAATCCATGTTTTGCTTCTTCTTTCTTCTACTTCT]
[+] EMBL CD078121 [GCAGAATTCGGTCCGAGGCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTAATCCATGTTTTGCTTCTTCTTTCTTCTACTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9636#0 TATAATAATGAAACAGTCAATACTAATAATAGTAATAATAATAAGTTTAATTTTAATAGA 60
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CCAAATGTTACTATATCAACGGATTGGAATTGGTGGCCATTTAATGTCCTTACCTATCTG 120
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTTAATGCATCTCCTTCACAAAGATTTACCATGATGATTGCATATGCTATTTTAGGTTTT 180
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTATTCCTATCAACAATACATCTATATCATCGATTAGCATTAATTGATTTACAAACTGGT 240
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CCAACTATACGTCGTGCTGGAATTCATCAGGAATCATCTACTACATCTAATTCAGAATTA 300
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CCATAATTTAGAAGCACAATTAACTTATTTAACTCAACTTACTTCAAAAATGATTGAAAC 360
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 ACTTGGTTATTTAACATCAGAATTAAATAGTTTCGTATTATATTCTAATCCAGAGAAATT 420
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TCACCAGATCAATCCACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAG 480
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTT 540
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 GTATTATTGTTGCATTTCATTTCAACGATCTTGTTTGTTGATCTTTCTTCTTTTGGTTCA 600
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CAACTCATATAAACATTCCCCACTATCAGATCAAAACGCACATATACACACACACACACA 660
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCT 720
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAA 780
consensus_9636#1 -------GCAGAATTCGGTCCGAGGCTCTTTGTATGTATAGTCCATTATCATCTATCTAA 53
* * ***********************************
consensus_9636#0 ACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAA 840
consensus_9636#1 ACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAA 113
************************************************************
consensus_9636#0 GGGAATAATGCCCTCCACCCCTCATTACCCCTCTTA-TCCATGTTTTGCTTCTTCTT-CT 898
consensus_9636#1 GGGAATAATGCCCTCCACCCCTCATTACCCCTCTTAATCCATGTTTTGCTTCTTCTTTCT 173
************************************ ******************** **
consensus_9636#0 TCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATG 958
consensus_9636#1 TCTACTTCT--------------------------------------------------- 182
*********
consensus_9636#0 TAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATT 1018
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 AGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTT 1078
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CTGTACCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTG 1138
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCC 1198
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGT 1258
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTG 1318
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAAT 1378
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 ATTTATTCTGTCAGCTATACATAGATGACTAGCGTTTGATCTGGATCAACTGGCTGGCAG 1438
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTAGTCCACTAGACTTGTTACGAACTTTATTTTCTTCGGATAGTTTGTTTCTAAATGACT 1498
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTC 1558
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAATACAAAACTTTACTACCACATTA 1618
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTTTCATCATTACCACTACTACTACTATATATTGTGTCCCAAGTTTCTGTGTAATAAATT 1678
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTTTTTCTCTCTTGTTTACTACCATAATTTTTGTTCTTGTTAACTTTTTTTTTTTCGTTT 1738
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 GATTTCGGTATTTCATTTCTTCCCTCCTCTCATTTCTCTCACAATCTACAAGAAGAAACA 1798
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTACAACGCATTCTCCCTTGTTTTATTCACCTTTCCAATTGAATCATGTGTTGTTACTGT 1858
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 TTGTTTGCTTCTTCTGCGCAAAATAACTATTCGTTCTTGTTTCGTTTAGTTCACCTTTTC 1918
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 CCATTGATGTTGACTTACATGTTATTATTATTATTATTATAAGTGATGATAATAATTGTA 1978
consensus_9636#1 ------------------------------------------------------------
consensus_9636#0 C 1979
consensus_9636#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||