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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1433 fasta sequence
[AGCCAANAATTTGGCACGAGGTTCATTATTACGAAATGATGTCGAAGGGAATATTATAAAAGTAACACGTGCTTCTACCAATCTACATGTGAGTACATTATATGACTTATTAGCTAATGAAATAAATCGTGATGATTCTTCCGGATCTATTGGTTTATTATGGTTGAAGCGTACAATTCAGTTTGTTATTTGTTTTCTTCATCATTTTGCTCAATCCAAGAATAATGAATTAGTACGTGATATTATTACAAGAGCTTATGATGAGACATTAACAAAATATCATAACAAATTGATGCGTCGTGCATTTCGTC-TTTTTTTACACATTGTCCCTAAACGATCGGTATTTATTAGAAAATTGGGACTGGAACAGGATAATTGTGAATTCATTGTACTTAGAGAAGCAGAACGATTTGTAAGAACCATTGAACCTCATCTACAAACTTTAAATCAAATGTTAATTCTATTCGGTTTAGAAGATCCACTTATTACTTAAAGAAATTAGTTTTCTTCTCTATTTTTTTTGACCTGTATTTAAATTTCATTCTCATCTTGACCTCCTTATCATCATATCAACATCATTTCATTCAAGTTACAATGACGATATCACCAACCAAGGGATTTATTCCCATCGACCGTCATCATCGACCATCATCATCATCAATGACATATTCAAAGGAAACTCTTTGTGTACCGGTTTATATTTTCAATGAAACTTGGGATCTTTCAATTTTTCTTTGGTGTTTTAAGCAACTCCTCTCTTTGTTGAATACACTCAATATGTTCAAAGTATTCATTTATTTTTAAGAACTTTCTTTACATACTACTTATTTGTTAATTCAGTTACCAAATAGGG-GGGGGGACAATCAAATGTATTTGAATATAATATTATTGAATCTAAGAACTATACAGTAAATACTTTATTTGTATGGAGTTTTGTTCTCTGAGCTGGATGATTTGGTCATGGAGCTTTCATCGTCCTTCCTTCTGGACGACATCATCAGCACAGAGTTTTACCTGAACTTTATTTGCAAAATATCTATCAGTTGTGTCATACTTAATTGTTCTTTCGTTTCCACACTAATCAGTCTTTGCTCTCGTTCTCTTCTCTTCGGTTTTTTTTAAACTTTCTACCTCCAGACATATCACTTTTGATTGTGGATACCATACTACTTATATCTGTCGATATCAGTAGTACACACTACAATTTCATTAATAATGTGTAAATTTTATTGTCCAATGTATTTCTGTGATAATTATCTTTTAAGATGTAATAGTGATATTTATTTTTTTGACTTTTTTAAACACTGTGGTGTACACATACCTCCTTTTCATTTCATTGTATAAAGTGTTTACATTCTCAAACAGGAAATTACTCAGTTACCAAAATATACATATGAACTTGAGAATGAAAAAAAAGTAAAAAAAANCATCTG]
[+] EMBL CD079625 [AGCCAANAATTTGGCACGAGGTTCATTATTACGAAATGATGTCGAAGGGAATATTATAAAAGTAACACGTGCTTCTACCAATCTACATGTGAGTACATTATATGACTTATTAGCTAATGAAATAAATCGTGATGATTCTTCCGGATCTATTGGTTTATTATGGTTGAAGCGTACAATTCAGTTTGTTATTTGTTTTCTTCATCATTTTGCTCAATCCAAGAATAATGAATTAGTACGTGATATTATTACAAGAGCTTATGATGAGACATTAACAAAATATCATAACAAATTGATGCGTCGTGCATTTCGTC TTTTTTTACACATTGTCCCTAAACGATCGGTATTTATTAGAAAATTGGGACTGGAACAGGATAATTGTGAATTCATTGTACTTAGAGAAGCAGAACGATTTGTAAGAACCATTGAACCTCATCTACAAACTTTAAATCAAATGTTAATTCTATTCGGTTTAGAAGATCCACTTATTACTTAAAGAAATTAGTTTTCTTCTCTATTTTTTTTGACCTGTATTTAAATTTCATTCTCATCTTGACCTCCTTATCATCATATCAACATCATTTCATTCAAGTTACAATGACGATATCACCAACCAAGGGATTTATTCCCATCGACCGTCATCATCGACCATCATCATCATCAATGACATATTCAAAGGAAACTCTNTGTGTACCGGTTTATATTTTCAATGAAACTTGng ]
[+] EMBL BG931364 [ TCTATTGGTTTATTATGGTTGAAGCGTACAATTCAGTTTGTTATTTGTTTTCTTCATCATTTTGCTCAATCCAAGAATAATGAATTAGTACGTGATATTATTACAAGAGCTTATGATGAGACATTAACAAAATATCATAACAAATTGATGCGTCGTGCATTTCGTCTTTTTTTTACACATTGTCCCTAAACGATCGGTATTCATTAGAAAATTGGGACTGGAACAGGATAATTGTGAATTCATTGTACTTAGAGAAGCAGAACGATTTGTAAGAACCATTGAACCTCATCTACAAACTTTAAATCAAATGTTAATTCTA ]
[-] EMBL CD155003 [ TAATGAATTAGTACGTGATATTATTACAAGAGCTTATGATGAGACATTAACAAAATATCATAACAAATTGATGCGTCGTGCATTTCGTC TTTTTTTACACATTGTCCCTAAACGATCGGTATTTATTAGAAAATTGGGACTGGAACAGGATAATTGTGAATTCATTGTACTTAGAGAAGCAGAACGATTTGTAAGAACCATTGAACCTCATCTACAAACTTTAAATCAAATGTTAATTCTATTCGGTTTAGAAGATCCACTTATTACTTAAAGAAATTAGTTTTCTTCTCTATTTTTTTTGACCTGTATTTAAATTTCATTCTCATCTTGACCTCCTTATCATCATATCAACATCATTTCATTCAAGTTACAATGACGATATCACCAACCAAGGGATTTATTCCCATCGACCGTCATCATCGACCATCATCATCATCAATGACATATTCAAAGGAAACTCTTTGTGTACCGGTTTATATTT ]
[+] EMBL CD080688 [ TATCATAACAAATTGATGCGTCGTGCATTTCGTC TTTTTTTACACATTGTCCCTAAACGATCGGTATTTATTAGAAAATTGGGACTGGAACAGGATAATTGTGAATTCATTGTACTTAGAGAAGCAGAACGATTTGTAAGAACCATTGAACCTCATCTACAAACTTTAAATCAAATGTTAATTCTATTCGGTTTAGAAGATCCACTTATTACTTAAAGAAATTAGTTTTCTTCTCTATTTTTTTTGACCTGTATTTAAATTTCATTCTCATCTTGACCTCCTTATCATCATATCAACATCATTTCATTCAAGTTACAATGACGATATCACCAACCAAGGGATTTATTCCCATCGACCGTCATCATCGACCATCATCATCATCAATGACATATTCAAAGGAAACTCTTTGTGTACCGGTTTATATTTTCAATGAAACTTGGGATCTTTCAATTTTTCTTTGGTGTTTTAAGCAACTCCTCTCTTTGTTGAATACACTCAATATGTTCAAAGTATTCATTTATTTTTAAGAACTTTCTTTACATACTACTTATTTGTTAATTCAGTTACCAAATAGGGNGGGGGGACAATCAAATGTATTTGAATATAATATTATTGAATCTAAGAACTATACAGTAAATACTNTATTTGTATGGAGTTNTGTTCTCTGAGCTGGATGATTTGGTCATGGAG ]
[-] EMBL CD074572 [ CAAGGGATTTATTCCCATCGACCGTCATCATCGACCATCATCATCATCAATGACATATTCAAAGGAAACTCTTTGTGTACCGGTTTATATTTTCAATGAAACTTGGGATCTTTCAATTTTTCTTTGGTGTTTTAAGCAACTCCTCTCTTTGTTGAATACACTCAATATGTTCAAAGTATTCATTTATTTTTAAGAACTTTCTTTACATACTACTTATTTGTTAATTCAGTTACCAAATAGGG GGGGGGACAATCAAATGTATTTGAATATAATATTATTGAATCTAAGAACTATACAGTAAATACTTTATTTGTATGGAGTTTTGTTCTCTGAGCTGGATGATTTGGTCATGGAGCTTTCATCGTCCTTCCTTCTGGACGACATCATCAGCACAGAGTTTTACCTGAACTTTATTTGCAAAATATCTATCAGTTGTGTCATACTTAATTGTTCTTTCGTTTCCACACTAATCAGTCTTTGCTCTCGTTCTCTTCTCTTCGGTTTTTTTTAAACTTTCTACCTCCAGACATATCACTTTTGATTGTGGATACCATACTACTTATATCTGTCGATATCAGTAGTACACACTACAATTTCATTAATAATGTGTAAATTTTATTGTCCAATGTATTTCTGTGATAATTATCTTTTAAGATGTAATAGTGATATTTATTTTTTTGAATTTTTTAAACACTGTGG ]
[-] EMBL CD074612 [ CGGTTTATATTTTCAATGAAACTTGGGATCTTTCAATTTTTCTTTGGTGTTTTAAGCAACTCCTCTCTTTGTTGAATACACTCAATATGTTCAAAGTATTCATTTATTTTTAAGAACTTTCTTTACATACTACTTATTTGTTAATTCAGTTACCAAATAGGG GGGGGGACAATCAAATGTATTTGAATATAATATTATTGAATCTAAGAACTATACAGTAAATACTTTATTTGTATGGAGTTTTGTTCTCTGAGCTGGATGATTTGGTCATGGAGCTTTCATCGTCCTTCCTTCTGGACGACATCATCAGCACAGAGTTTTACCTGAACTTTATTTGCAAAATATCTATCAGTTGTGTCATACTTAATTGTTCTTTCGTTTCCACACTAATCAGTCTTTGCTCTCGTTCTCTTCTCTTCGGTTTTTTTTAAACTTTCTACCTCCAGACATATCACTTTTGATTGTGGATACCATACTACTTATATCTGTCGATATCAGTAGTACACACTACAATTTCATTAATAATGTGTAAATTTTATTGTCCAATGTATTTCTGTGATAATTATCTTTTAAGATGTAATAGTGATATTTATTTTTTTGACTATTTTAAACACTGTGG ]
[-] EMBL CD073889 [ AGCAACTCCTCTCTTTGTTGAATACACTCAATATGTTCAAAGTATTCATTTATTTTTAAGAACTTTCTTTACATACTACTTATTTGTTAATTCAGTTACCAAATAGGG GGGGGGACAATCAAATGTATTTGAATATAATATTATTGAATCTAAGAACTATACAGTAAATACTTTATTTGTATGGAGTTTTGTTCTCTGAGCTGGATGATTTGGTCATGGAGCTTTCATCGTCCTTCCTTCTGGACGACATCATCAGCACAGAGTTTTACCTGAACTTTATTTGCAAAATATCTATCAGTTGTGTCATACTTAATTGTTCTTTCGTTTCCACACTAATCAGTCTTTGCTCTCGTTCTCTTCTCTTCGGTTTTTTTTAAACTTTCTACCTCCAGACATATCACTTTTGATTGTGGATACCATACTACTTATATCTGTCGATATCAGTAGTACACACTACAATTTCATTAATAATGTGTAAATTTTATTGTCCAATGTATTTCTGTGATAATTATCTTTTAAGATGTAATAGTGATATTTATTTTTTTGACTTTTTTAAACACTGTGGTGTACACATACCTCCTTTTCATTTCATTGTATAAAGTGTTTACATTCTCAAACAGGAAATTACTCAGTTACCAAAATATACATATGAACTTGAGAATGAAAAAAAAGTAAAAAAAANCATCTG]
consensusID : consensus_9651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 865 fasta sequence
[TGGTTTGCCTAGTTTGGTTTCACGTAGCTGCACTGCTTTTGCTTCTCCATACGTCCACACAGACGGATGTCGAATTGAAGAATCCTGAAGATGTGAAAAAAGAGATTTCGCTAAATAGAAGTAAGTAATGGTTGTTCCGAATTTTAAAGACTATGTATCATACAATCAAACGTGTTCATGAAACACAAGTTATTACCTACTACTTACATAAAGAAAAATTCGGTTCATTCGTTTGTGTCTGAGGACTCCAATTTCATAGATGTATAGTAGTGTGTTTGAAATCGTTTCACCTTATTATTTGCTGAGAGTTGTGTGATGTTCTGTTATGTAACGGCTTTGGTATATTCATCAAAATGAAATCATTTTCTCAATGTTACTGATGAATGCTTTCACAAGTAAGTAATATGAATGTCCAGTAACAAAATGAATAATAAAACACAATTCGGTTAATCTTTAGAACAGATAGATGAGGTGATAGAAATGTTCAATACCATCGTCAGCGAAATACAATCCCTGAGAGATACAATTGTAAAAGCAGATCCAAATGGAATGAAGAATATCGACAAGTATATCGAATGTAGAAGCAAATATTTTAAGGCTTATAGATCCAATGAAACTTGGTCAACTATCGAATATTCGCGGGGAAGTTACGAGAAACAGTTTCCGAATGTTAATTTCTATTCATCGAAATGGAAAACATCTTTAAAGGAAAATGCTGACCTCTCTAAAAATGTGATGTCTGAGAACAGTTTCAAAATTTGTAATAAGCTGATACCATACCGTACATCAGATGTTAGACTAATGGATGAGCATATTAAAATGAACTTCGGATTCATTAAAGAATTCCACCACCGGATACGTTAAG]
[+] EMBL CD094962 [TGGTTTGCCTAGTTTGGTTTCACGTAGCTGCACTGCTTTTGCTTCTCCATACGTCCACACAGACGGATGTCGAATTGAAGAATCCTGAAGATGTGAAAAAAGAGATTTCGCTAAATAGAAGTAAGTAATGGTTGTTCCGAATTTTAAAGACTATGTATCATACAATCAAACGTGTTCATGAAACACAAGTTATTACCTACTACTTACATAAAGAAAAATTCGGTTCATTCGTTTGTGTCTGAGGACTCCAATTTCATAGATGTATAGTAGTGTGTTTGAAATCGTTTCACCTTATTATTTGCTGAGAGTTGTGTGATGTTCTGTTATGTAACGGCTTTGGTATATTCATCAAAATGAAATCATTTTCTCAATGTTACTGATGAATGCTTTCACAAGTAAGTAATATGAATGTCCAGTAACAAAATGAATAATAAAACACAATTCGGTTAATCTTTAGAACAGA ]
[-] EMBL CD094639 [ ACATAGACAATAATTCGGTTCATTCGTTTGTGTCTGAGGACTTTAATTTCAAAGATGTATAGTAGTGTGTTTGAAATCGTATCACCTCATTATTTGCTGAGACTTGTGTGATGTTCTGTAATGTAACGACTTTGGTATATTCATCGAAATGAAATCGTTTTCTCAATGTTACTGATGAATGCTTTCACAAGTAAGTAATATGAATGTCCAGTAACAAAATGAATAATAAAACACAATTCGGTTAATCTTTAGAATGGTTAGATGAGGTGATAGAAATGTTCAATACCATCGTCAGCGAAATACAATCCCTGAGAGATACAATTGTAAAAGCAGATCCAAATGGAATGAAGAATATCGACAAGTATATCGAATGTAGAAGCAAATATTTTAAGGCTTATAGATCCAATGAAACTTGGTCAACTATCGAATATTCGCGGGGAAGTTACGAGA ]
[+] EMBL AI021755 [ AGAAGCAATTATTTTAAGGCTTATAGATCCAATGAAACTTGGTCAACTATCCAAGATTTGCGGGGAAATTACGAGAAACAGTTTCCGAATGTTAATTTCTATTCATCGAAATGGAAAACATCTTTAAAGGAAAATGCTGACCTCTCTAAAAATGTGATGTCTGAGAACAGTTTCAAAATTTGTAATAAGCTGATACCATACCGTACATCAGATGTTAGACTAATGGATGAGCATATTAAAATGAACTTCGGATTCATTAAAGAATTCCACCACCGGATACGTTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9651#0 AGCCAANAATTTGGCACGAGGTTCATTATTACGAAATGATGTCGAAGGGAATATTATAAA 60
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 AGTAACACGTGCTTCTACCAATCTACATGTGAGTACATTATATGACTTATTAGCTAATGA 120
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 AATAAATCGTGATGATTCTTCCGGATCTATTGGTTTATTATGGTTGAAGCGTACAATTCA 180
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 GTTTGTTATTTGTTTTCTTCATCATTTTGCTCAATCCAAGAATAATGAATTAGTACGTGA 240
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 TATTATTACAAGAGCTTATGATGAGACATTAACAAAATATCATAACAAATTGATGCGTCG 300
consensus_9651#1 ---------------------------------TGGTTTGCCTAGTTTGGTTTCACGTAG 27
* * ** * *** *
consensus_9651#0 -TGCATTTCGTCTTTTTTTACACATTGTCCCTAAACGATCGGTATTTATTAGAAAATTGG 359
consensus_9651#1 CTGCACTGCTTTTGCTTCTCCATAC-GTCCACACA-GACGGATGTCGAATTGAAGAATC- 84
**** * * * * ** * ** * **** * * ** * * * * * *** * *
consensus_9651#0 GACTGGA-ACAGGATAATTGTGAATTCATTGTACTTAGAGAAGCAGAACGATTTGTAAGA 418
consensus_9651#1 --CTGAAGATGTGAAAAAAGAGATTTCGCTAAATAGAAGTAAGT--AATGGTTGTTCCGA 140
*** * * ** ** * ** *** * * * *** ** * ** * **
consensus_9651#0 ACCATTGAACCTCATCTACAAACTTTAAATCAAATGTTAATTCTATTCGGTTTAGAAGAT 478
consensus_9651#1 ATT-TTAAAGACTATGTAT---CATACAATCAAACGT---GTTCATGAAACACAAGTTAT 193
* ** ** ** ** * * ******* ** * ** * **
consensus_9651#0 CCACTTATTACTTAAAGAAATTAGTTTTCTTCTCTATTTTTTTTGACCT-GTATTTAAAT 537
consensus_9651#1 T-ACCTACTACTTACATAAAGAAAAATTCGGTTCATTCGTTTGTGTCTGAGGACTCCAAT 252
** ** ****** * *** * *** ** * *** ** * * * * ***
consensus_9651#0 TTCATTCTCATCT--TGACCTCCTTATCATCATATCAAC--ATCATTTCATTCAAGTTAC 593
consensus_9651#1 TTCATAGATGTATAGTAGTGTGTTTGAAATCGTTTCACCTTATTATTTGCTGAGAGTTGT 312
***** * * * * ** *** * *** * ** **** * ****
consensus_9651#0 AATGACGATATCACCAACCAAGGGATTTATTCCCATCGACCGTCATCATCGACCATCATC 653
consensus_9651#1 G-TGATG-TTCTGTTATGTAACGGCTTTGGTATATTCA----TCAAAATGAA--ATCATT 364
*** * * * ** ** *** * ** *** ** * *****
consensus_9651#0 ATCATCAATGACATATTCAAAGGAAACTCTTTGTGTACCGGTTTATATTTTCAATGAAAC 713
consensus_9651#1 TTC-TCAATGTTACTGATGAATGCTTTCACAAGTA-AGTAATATGAATGTCCAGTAACAA 422
** ****** * ** * ** * * * ** * ** * * *
consensus_9651#0 TTGGGATCTTTCAATTTTTCTTTGGTGTTTTAAGCAACTCCTCTCTTTGTTGAATACACT 773
consensus_9651#1 AATGAATAATAAAACACAATTCGGTTAATCTTTAGAACAGATAGATGAGGTGA------T 476
* ** * ** * * * * * *** * * * *** *
consensus_9651#0 CAATATGTTCAAAGTATTCATTTATTTTTAAGAACTTTCTTTACATACTACTTATTTGTT 833
consensus_9651#1 AGAAATGTTCAATACCATCGTCAGCG---AAATACAATCCCTGAGAGATAC--AATTGTA 531
* ******** ** * ** ** ** * *** * ****
consensus_9651#0 AATTCAGTTACCAAATAGGGGGGGGGACAATCAAATGTAT-TTGAATATAATATTATTGA 892
consensus_9651#1 AAAGCAGAT-CCAAATGGAATGAAGAATATCGACAAGTATATCGAATGTAGAAGCAAATA 590
** *** * ****** * * * * * * * **** * **** ** * * *
consensus_9651#0 ATCTAAGAACTATACAGTAAAT---ACTTTATTTG-TATGGAGTTTTGTTCTCTGAGCTG 948
consensus_9651#1 TTTTAAGGCTTATAGATCCAATGAAACTTGGTCAACTATCGAATATTCGCGGGGAAGTTA 650
* **** **** * *** **** * *** ** * ** ** *
consensus_9651#0 GATGATTTGGTCATGGAGCTTTCATCGTCCTTCCTTC---TGGACGACATCATCAGCACA 1005
consensus_9651#1 CGAGAAACAGTTTCCGAATGTTAATTTCTATTCATCGAAATGGAAAACATCTTTAAAGGA 710
** ** ** ** ** *** * **** ***** * * *
consensus_9651#0 GAGTTTTACCTGAACTTTATTTGCAAAATATCTATCAGTTGTGTCATACTTAATTGTTCT 1065
consensus_9651#1 AAATGCTGACCT--CTCTAAAAATGTGATGTCTGAGAACAGTTTCAAAATTTGTAATAAG 768
* * * * ** ** ** *** * ** *** * ** * *
consensus_9651#0 TTCGTTTCCACACTAATCAGTCTTTGCTCTCGTTCTCTTCTCTTCGGTTTTTTTTAAACT 1125
consensus_9651#1 CT-GATACCATACCGTACA---TCAGATGTTAGACTAATGGAT--GAGCATATTAAAATG 822
* * * *** ** ** * * * * ** * * * * ** ***
consensus_9651#0 TTCTACCTCCAGACATATCACTTTTGATTGTGGATACCATACTACTTATATCTGTCGATA 1185
consensus_9651#1 AACTTCGGATTCATTAAAGAATTCCACCACCGGATACGTTAAG----------------- 865
** * * * * ** ****** **
consensus_9651#0 TCAGTAGTACACACTACAATTTCATTAATAATGTGTAAATTTTATTGTCCAATGTATTTC 1245
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 TGTGATAATTATCTTTTAAGATGTAATAGTGATATTTATTTTTTTGACTTTTTTAAACAC 1305
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 TGTGGTGTACACATACCTCCTTTTCATTTCATTGTATAAAGTGTTTACATTCTCAAACAG 1365
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 GAAATTACTCAGTTACCAAAATATACATATGAACTTGAGAATGAAAAAAAAGTAAAAAAA 1425
consensus_9651#1 ------------------------------------------------------------
consensus_9651#0 ANCATCTG 1433
consensus_9651#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||