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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1930 fasta sequence
[AATAGGCTTATTGATATCATCACCTTACAAGTATTTCTTACACTTAAAAAACTGAACAACAGTTTGTTTTTAATGTAAATTAAGTGAAATAAAAAGTGGTAGTGTACAGTTAATTTCAGTTACTAAAACAAACAAGTACACATTTACAATTAATTAAGTTACCAATCATGTCATACGATTCTCACTGAACAGACGAATCGTGATTCGACTATATCAAATTTAATAAAAGACTCTATAAGTAGACACATTGAACAAAAAAAGAGAACATTATTAGAAAGCATTAGAGATCAGAAACACAGAAAATGTAGAAAAGTTAGGTAATAATTATTCAAGTTAGTGGAATTATCATCAAAGTATCCCAGTAAAACACAATATATTGTTTTCTTTTAACAATTGGATTTTGGAATACGTCGTGGATGAAAATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATACTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCATGCTCTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGACCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGCAATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAATGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCACGGTCATTATTATGACCATCATCGTCATCATCACTGGATTCATTCTCCTCTTCGTTATTCCGTTCATCAATACAATCGCGATTTCTCGATCCTCTAGCTCTATTAGAATCAAAATCAAGGCCACGAAAATTATAACCCATATTTAACAGCATTACTTCCAGAGGATCAGCGTTAGAACGTTGTTGATTCCGTTCAGCTGCTCCAACTTGATCTCTAACAACTCGTGATTGATCAGGGTCTTCTTCACAATTCGGTGACCATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGTTGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGTTGTATTACGATCCCATATAAAAAATGCACCACAATCAGATCCACCGACAATATATTGCCCATAGCTCCCAAAGAAATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAATTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTTTCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCGTTGGTATCGTTGTTATCATTATTATCATGAATTGATGTTTTTCTTTCACTAACTTGCTTTTCTTTTCCTTTCA]
[+] EMBL CD077103 [AATAGGCTTATTGATATCATCACCTTACAAGTATTTCTTACACTTAAAAAACTGAACAACAGTTTGTTTTTAATGTAAATTAAGTGAAATAAAAAGTGGTAGTGTACAGTTAATTTCAGTTACTAAAACAAACAAGTACACATTTACAATTAATTAAGTTACCAATCATGTCATACGATTCTCACTGAACAGACGAATCGTGATTCGACTATATCAAATTTAATAAAAGACTCTATAAGTAGACACATTGAACAAAAAAAGAGAACATTATTAGAAAGCATTAGAGATCAGAAACACAGAAAATGTAGAAAAGTTAGGTAATAATTATTCAAGTTAGTGGAATTATCATCAAAGTATCCCAGTAAAACACAATATATTGTTTTCTTTTAACAATTGGATTTTGGAATACGTCGTGGATGAAAATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATACTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCATGCTCTTCCCGCTCACTTGTTGT ]
[+] EMBL CD090030 [ AAGATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATACTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCATGCTCTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGACCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGCAATGTGTTGTCA ]
[-] EMBL CD090114 [ CTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACCAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGACCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGCAATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAATGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCA ]
[-] EMBL CD187518 [ GTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGG TTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCT ]
[+] EMBL CD194111 [ TCGACTTTGACTAGAATGTATTCTACGTGTACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTG ]
[-] EMBL CD115814 [ GATTCACTGTGCAATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAATGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCACGGTCATTATTATGACCATCATCGTCATCATCACTGGATTCATTCTCCTCTTCGTTATTCCGTTCATCAATACAATCGCGATTTCTCGATCCTCTAGCTCTATTAGAATCAAAATCAAGGCCACGAAAATTATAACCCATATTTAACAGCATTACTTCCAGAGGATCAGCGTTAGAACGTTGTTGATTCCGTTCAGCTGCTCCAACTTGATCTCTAACAACTCGTGATTGATCAGGGTCTTCTTCACAATTCGGTGACCATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGTTGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGT ]
[+] EMBL CD190383 [ GTGACCATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGTTGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGTTGTATTACGATCCCATATAAAAAATGCACCACAATCAGATCCACCGACAATATATTGCCCATAGCTCCCAAAGAAATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAATTCCATGACTCTGAGGAT ]
[-] EMBL CD112615 [ ATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAGCAATTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTTTCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCGTTGGTATCGTTGTTATCATTATTATCATGAATTGATGTTTTTCTTTCACTAACTTGCTTTTCTTTTCCTTTCA]
[-] EMBL CD112682 [ ATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTCCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAATTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTTTCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCATTGGTATCGTTGTTATCATTATTATCATGAATTGATGCTTTTCTTTCACTAACTTGCTTTTCTTTTCCTTTCA]
consensusID : consensus_9653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[ACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAGCCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTCTTTGTTCGTAAATGCTTAGGTGTTTGAGAACAACGTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGAATATCAGTTTGACCAACTGCTTCAATGTTTTCATCACTAAATTCACGTTACCATCGGTCTTCCATCG]
[-] EMBL CD114116 [ACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAGCCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTCTTTGTTCGTAAATGCTTAGGTGTTTGAGAACAACGTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGAATATCAGTTTGACCAACTGCTTCAATGTTTTCATCACTAAATTCACGTTACCATCGGTCTTCCATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9653#0 AATAGGCTTATTGATATCATCACCTTACAAGTATTTCTTACACTTAAAAAACTGAACAAC 60
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 AGTTTGTTTTTAATGTAAATTAAGTGAAATAAAAAGTGGTAGTGTACAGTTAATTTCAGT 120
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TACTAAAACAAACAAGTACACATTTACAATTAATTAAGTTACCAATCATGTCATACGATT 180
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 CTCACTGAACAGACGAATCGTGATTCGACTATATCAAATTTAATAAAAGACTCTATAAGT 240
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 AGACACATTGAACAAAAAAAGAGAACATTATTAGAAAGCATTAGAGATCAGAAACACAGA 300
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 AAATGTAGAAAAGTTAGGTAATAATTATTCAAGTTAGTGGAATTATCATCAAAGTATCCC 360
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 AGTAAAACACAATATATTGTTTTCTTTTAACAATTGGATTTTGGAATACGTCGTGGATGA 420
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 AAATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATA 480
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 CTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCA 540
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TGCTCTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACT 600
consensus_9653#1 ------------------------------ACTGTTGACTGTGAATTGATTGAATGAACT 30
******************************
consensus_9653#0 TCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTA 660
consensus_9653#1 TCAATAGGGAAAAAATCAATTAGCCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTA 90
********************** *************************************
consensus_9653#0 GCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGT 720
consensus_9653#1 GCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGT 150
************************************************************
consensus_9653#0 ATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGAC 780
consensus_9653#1 ATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGAC 210
************************************************************
consensus_9653#0 TCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGG 840
consensus_9653#1 TCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGG 270
************************************************************
consensus_9653#0 GTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAA 900
consensus_9653#1 GTTTTTTCATCAGATAGATTCCCTGTCTTTGTTCGTAAATGCTTAGGTGTTTGAGAACAA 330
************************** ********* *********************
consensus_9653#0 CCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGA 960
consensus_9653#1 CGTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGAATATCAGTTTGA 390
* ********************************************** ***********
consensus_9653#0 CCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGC 1020
consensus_9653#1 CCAACTGCTTCAATGTTTTCAT-CACTAAATTCACGTTAC-CATCGGTCTTCCATCG--- 445
********************** **************** ** * ** *
consensus_9653#0 AATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAA 1080
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCACGGTCATTATTATGACCA 1140
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TCATCGTCATCATCACTGGATTCATTCTCCTCTTCGTTATTCCGTTCATCAATACAATCG 1200
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 CGATTTCTCGATCCTCTAGCTCTATTAGAATCAAAATCAAGGCCACGAAAATTATAACCC 1260
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 ATATTTAACAGCATTACTTCCAGAGGATCAGCGTTAGAACGTTGTTGATTCCGTTCAGCT 1320
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 GCTCCAACTTGATCTCTAACAACTCGTGATTGATCAGGGTCTTCTTCACAATTCGGTGAC 1380
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 CATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGT 1440
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGTTGTATTA 1500
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 CGATCCCATATAAAAAATGCACCACAATCAGATCCACCGACAATATATTGCCCATAGCTC 1560
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 CCAAAGAAATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCT 1620
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 GAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTA 1680
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 CATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAA 1740
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTT 1800
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCGTTG 1860
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 GTATCGTTGTTATCATTATTATCATGAATTGATGTTTTTCTTTCACTAACTTGCTTTTCT 1920
consensus_9653#1 ------------------------------------------------------------
consensus_9653#0 TTTCCTTTCA 1930
consensus_9653#1 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||