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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1334 fasta sequence
[ATCTTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACTTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAAATTTGTTTTGAATGTCTTTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTTTCCACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCCAAACTGGTCACCGCCGGCTCGTCTCAGTACTCTTGAACCATTTGGTCTCAGCATCAGTAATCTTTGTCTTTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGAAAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGTTTCATATCTCTGTGCAAAATACGGTTGGCATGGAGGTAGTATAGTGCAGATACCAACTGACAAGCCACGGACCTAACCGTTTCTTCGGAAAGTCGGCCATCATCTTCGATTATTTGGAAAAGATCTCCTTCAGCATAATCAGTAATCGCAACTACCTCTCTTTCTGTCTCAAATGAGTCTTGCATTTCTATTATGTTGGTGTGATGCATTGATCGCATGATCTCGATTTCAAGCTTAAGATTTTAAGAGCATT]
[-] EMBL CD185456 [ATCTTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTTTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACCTTTTCTCCATCA ]
[+] EMBL CD156442 [ TTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACTTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAA ]
[-] EMBL CD185547 [ TTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATG ]
[+] EMBL CD113451 [ TATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTCGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACTTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAAATTTGTTTTGAATGTCTTTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTTTCCACGGCGTCGGTCTATAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCCAAACTGGTCACCGCCGGCTCGTCTCAGTACTC ]
[-] EMBL CD187759 [ TTTTTCTCCATCACCATATTTCAAAAAAGGGCGCCTATCTGAAATTTGTTTTGAATGTCTTTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTCTCCACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGC ]
[+] EMBL CD193124 [ CTTCTCCGACAACAGACTTTCCACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCCAAACTGGTCACCGCCGGCTCGTCTCAGTACTCTTGAACCATTTGGTCTCAGCATCAGTAATCTTTGTCTTTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGAAAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATA ]
[-] EMBL CD113424 [ TTGTC TTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGAAAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATAC ACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAACCTCTGGCGCTATATATAGAGGAGTTCCCCTTATAGATGTCAGnnntnntca ]
[-] EMBL CD113384 [ AACGTTGTCGTGCATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTGTTCAATAATCTATGGCGCCATATATACAGGAGTTCCCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGT ]
[-] EMBL CD068461 [ GTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGTTTCATATCTCTGTGCAAAATACGGTTGGCATGGAGGTAGTATAGTGCAGATACCAACTGACAAGCCACGGACCTAACCGTTTCTTCGGAAAGTCGGCCATCATCTTCGATTATTTGGAAAAGATCTCCTTCAGCATAATCAGTAATCGCAACTACCTCTCTTTCTGTCTCAAATGAGTCTTGCATTTCTATTATGTTGGTGTGATGCATTGATCGCATGATCTCGATTTCAAGCTTAAGATTTTAAGAGCATT]
consensusID : consensus_9691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[TTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTAGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCTTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTG]
[-] EMBL CD191358 [TTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTAGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCTTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTG]
consensusID : consensus_9691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence
[CGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTACAAAAGATGGGTATTGGTAAACGGGTAAAAAAGAACCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGT]
[-] EMBL CD193104 [CGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTACAAAAGATGGGTATTGGTAAACGGGTAAAAAAGAACCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9691#0 ATCTTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATT 60
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTC 120
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAAT 180
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCT 240
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGG 300
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCAC 360
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAAATTTGTTTTGAATGTCT 420
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTTTCC 480
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 ACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCC 540
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 AAACTGGTCACCGCCGGCTCGTCTCAGTACTCTTGAACCATTTGGTCTCAGCATCAGTAA 600
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TCTTTGTCTTTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGA 660
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 AAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAG 720
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTT 780
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 AAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAG 840
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ---------------------------------------------------TTGGTGTAT 9
consensus_9691#0 TTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACA 900
consensus_9691#2 ---------------CGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACA 45
consensus_9691#1 TATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATA-TTTGTGTTACAATGT 68
*** * * * ** * * * * ** ** * * *
consensus_9691#0 ACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGC-G 959
consensus_9691#2 ACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGC-G 104
consensus_9691#1 GCCCGATGACTTAATTGCAG--ATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAG 126
*** ** * * *** ** *** * * *** * * * *** *
consensus_9691#0 CCATATA------TAGAGGAGTTCCCT--------------------------------- 980
consensus_9691#2 CCATATA------TAGAGGAGTTCCCTACAAAAGATGGGTATTGGTAAACGGGTAAAAAA 158
consensus_9691#1 ATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATT 186
** * ******
consensus_9691#0 ------TTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGC------GCAAACC 1028
consensus_9691#2 GAACCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGC------GCAAACC 212
consensus_9691#1 CTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTAGAGGTCGTCTGGTAGGACAAC 246
** * * * **** * ** ** * * ** * * * *
consensus_9691#0 CGAAATCACAAAGCTTGACGACGCCATCTTGACCCA--GCAAAATATTTTGTGGTTTCAT 1086
consensus_9691#2 CGAAATCACAAAGCTTGACGACGCCATCTTGACCCA--GCAAAATATTTTGTGGT----- 265
consensus_9691#1 TTTGGTTAGACAATTCGTTCCCGCCTTTCAATCTTATCGCAGACAAATGGATGATCCAAA 306
* * * * * * **** * * * *** * * * ** *
consensus_9691#0 ATCTCTGTGCAAAATACGGTTGGCATGGAGGTAGTATAGTGCAGATACCAACTGACAAGC 1146
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 AGGTCTGGCCACTG---------------------------------------------- 320
consensus_9691#0 CACGGACCTAACCGTTTCTTCGGAAAGTCGGCCATCATCTTCGATTATTTGGAAAAGATC 1206
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TCCTTCAGCATAATCAGTAATCGCAACTACCTCTCTTTCTGTCTCAAATGAGTCTTGCAT 1266
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TTCTATTATGTTGGTGTGATGCATTGATCGCATGATCTCGATTTCAAGCTTAAGATTTTA 1326
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 AGAGCATT 1334
consensus_9691#2 --------
consensus_9691#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||