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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1207 fasta sequence
[CGGAGCCATNAATTCGGCACGAGGGTGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCAAATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAGAGAAGGCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAAGCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA-TTTCTGTCATGGACATATATATCTAT-GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTACGATGAATTGAAAAAAAAAAA]
[+] EMBL CD081634 [CGGAGCCATNAATTCGGCACGAGGGTGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCAAATTA ]
[+] EMBL CD081860 [ tcGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTG ACCACATCATGTTNTAT ]
[+] EMBL CD078379 [ GCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGCCGCACTTAC ]
[+] EMBL CD078292 [ GCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCANATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAGAGAAGG ]
[-] EMBL CD075456 [ CTNTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCAAATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAGAGAAGGCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAAGCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA TTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTAC ]
[-] EMBL AI395311 [ GTA GTGGCCCTTTGACACTTTCATATGGAGACATATGGAACAGAGAA GCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAAGCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA TTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTACGATGAATTGAAAAAAAAAAA]
[-] EMBL CD075574 [ ACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA TTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTAC ]
[-] EMBL AI395830 [ TGGATATCCTAATTTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAACTTACGATGAATTGAAAAAAAAAAA]
[-] EMBL CD072940 [ CATGGGCATATATATCTATCGCAGCATTCCTCAGCAAATAAGGAAGTCTCTTGACAGTATGTTTTAGTTATATCTTGCTCTTTAACTATGGGTAAGACATCTGAGCTGTGATTCTCTGCTTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTTCG ]
consensusID : consensus_9707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence
[TTTACTCTTGTGATTTGTTGCATGCTTTTGAATATTCCTACCAGGAACAATGAATATTGGTGATAAATTTATAACGAAATTGTTAGATATGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAA]
[+] EMBL AI977217 [TTTACTCTTGTGATTTGTTGCATGCTTTTGAATATTCCTACCAGGAACAATGAATATTGGTGATAAATTTATAACGAAATTGTTAGATATGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAA]
[+] EMBL CD077633 [ TTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9707#0 -------------------------------------------------------CGGAG 5
consensus_9707#1 TTTACTCTTGTGATTTGTTGCATGCTTTTGAATATTCCTACCAGGAACAATGAATATTGG 60
*
consensus_9707#0 CCATNAATTCGGCACGAGG---------GTGAAATTACAAAGAGAAAATGTATTCAGAGG 56
consensus_9707#1 TGATAAATTTATAACGAAATTGTTAGATATGAAATTACAAAGAGAAAATGTATTCAGAGG 120
** **** **** *******************************
consensus_9707#0 TGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGC 116
consensus_9707#1 TGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGC 180
************************************************************
consensus_9707#0 TTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTA 176
consensus_9707#1 TTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTA 240
************************************************************
consensus_9707#0 TTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGA 236
consensus_9707#1 TTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGA 300
************************************************************
consensus_9707#0 TGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGA 296
consensus_9707#1 TGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGA 360
************************************************************
consensus_9707#0 TTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGC 356
consensus_9707#1 TTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGC 420
************************************************************
consensus_9707#0 ATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTC 416
consensus_9707#1 ATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTC 480
************************************************************
consensus_9707#0 ATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACA 476
consensus_9707#1 ATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACA 540
************************************************************
consensus_9707#0 TTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGT 536
consensus_9707#1 TTATCAAAGTTTCGATGCTAATTCACCTCTTGAA-------------------------- 574
**********************************
consensus_9707#0 TCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACC 596
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 ACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTT 656
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 TTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCA 716
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 AAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGG 776
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 AACAAGAGCAAATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAG 836
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 AGAAGGCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAA 896
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 GCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTA 956
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 CACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAATTTCT 1016
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 GTCATGGACATATATATCTATGCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTA 1076
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 TGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGA 1136
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 TTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTACGATGAATTG 1196
consensus_9707#1 ------------------------------------------------------------
consensus_9707#0 AAAAAAAAAAA 1207
consensus_9707#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||