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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 798 fasta sequence
[CAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATTAACAAATGTATCACCAACGATTGGAATTAATCTATCCGGAATAAGTGGATGCTTGATTAGGCGACCAATTAAATGTCGATAACGATTATCGTCAGGATGTACAGCAACGCCCGTATCACCTAACATTGTTTCAAGTCGTGTGGTTGCGACGACAATTTCAGTGTCTGATTCAGCTTTACTAGGATCAGGTAAAAGAGGGTAAGCAAATGATGTAATAACTCCGAACGCTACAGGTTTATTATAGCCAGGAACACGAAGTAAAGTACGTCCAGAAAGTTCTTGTTTATCTACTTCAATATCTGATATGGCTGAACGTAAAGTACAGGACCAATTGACCAACCGAAGGCTTCGATAAATTAAACCATCATTGTATAAACGAATAAAAGCCTCTGTAACAGCTTTACTCATAGATGGATCCATAGTGAATCTAGCTCGAGACCAATCACAAGAACTTCCTAAAGCTCTGAGTTGTTGATAAATGCGATCACC----TCTTCTTTCCATTTCCAAACTTCTTTCATAAATTCATCACGTCCAATATCATGTCGAGTGAGTTTTTTCTCTCTCCACAACTTTTTTTCTACCACTACCTGAGTGGCGATACCGGCGTGGTCACATCCAGGAACCCAGAGTGTAACTTTTCCATTCATTCTGTGCCATCGTGTAATAGCATCTTCAACGCTGTTTGTCAAAGCGTGGCCCAAATGCAA]
[+] EMBL CD162821 [CAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATTAACAAATGTATCACCAACGATTGGAATTAATCTATCCGGAATAAGTGGATGCTTGATTAGGCGACCAATTAAATGTCGATAACGATTATCGTCAGGATGTACAGCAACGCCCGTATCACCTAACATTGTTTCAAGTCGTGTGGTTGCGACGACAATTTCAGTGTCTGATTCAGCTTTACTAGGATCAGGTAAAAGAGGGTAAGCAAATGATGTAATAACTCCGAACGCTACAGGTTTATTATAGCCAGGAACACGAAGTAAAGTACGTCCAGAAAGTTCTTGTTTATCTACTTCAATATCTGATATGGCTGAACGTAAAGTACAGGACCAATTGACCAACCGAAGGCTTCGATAAATTAAACCATCATTGTATAAACGAATAAAAGCCTCTGTAACAGCTTTACTCATAGATGGATCCATAGTGAATCTAGCTCGAGACCAATCACAAGAACTTCCTAAAGCTCTGAGTTGTTGATAAATGCGATCACC TCTTCTTTCCATT ]
[-] EMBL CD098334 [ GTTCTTGTTTATCTACTTCAATATCTGATATGGCTGAACGTAAAGTACAGGACCAATTGACCAACCGAAGGCTTCGATAAATTAAACCATCATTGTATAAACGAATAAAAGCCTCTGTAACAGCTTTACTCATAGATGGATCCATAGTGAATCTAGCTCGAGACCAATCACAAGAACTTCCTAAAGCTCTGAGTTGTTGATAAATGCGATCACCCTTTTCTTCTTTCCATTTCCAAACTTCTTTCATAAATTCATCACGTCCAATATCATGTCGAGTGAGTTTTTTCTCTCTCCACAACTTTTTTTCTACCACTACCTGAGTGGCGATACCGGCGTGGTCACATCCAGGAACCCAGAGTGTAACTTTTCCATTCATTCTGTGCCATCGTGTAATAGCATCTTCAACGCTGTTTGTCAAAGCGTGGCCCAAATGCAA]
consensusID : consensus_9709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 627 fasta sequence
[TTTTAAAACAAGATAATGATGTATTAGATACATGGTTCTCTTCACAATTATTT-CCATTCTCTGTATTTGGTTGGCCTGAACAAACACCAGATTTAAAAGCTTATTATCCTGGGAGTTTATTAGAAACTGGGCATGATATTATATTTTTCTGGGTTGCACGCATGGTTATGATTGGTTTGAAATTAATGGGACAATTACCATTTCATACAGTCTATTTACATGCTATGGTTCGTGATGCTCATGGTAAAAAAATGAGTAAATCTTTGGGTAATGCAATTGATCCGGTAGATGTCATCAATGGAATATCTTTAGAAGATTTACAAAAACAGTTAGAACAAGGTAATCTTGATCCGAATGAATTAACACGTGCTCGTCAAGCTCAAGCGAAAGATTTTCCTAAAGGTATTCCTGAATGTGGAACTGACGCTCTCCGAATTGCTTTATGTGCTTATACAGCTCAAGGAAGAAATATCAATTTGGATATAATGCGTGTACAAGGCTATCGATTTTTCTGTAATAAACTATGGAATGCTGTTCGTTACGCATTATTTCATTGTTTAGATAAAGAATTTATCCCGCCAGATATGACTGATTTAAATAGTTTATTTAAACAATTCATACAACATA]
[+] EMBL CD162716 [TTTTAAAACAAGATAATGATGTATTAGATACATGGTTCTCTTCACAATTATTT CCATTCTCTGTATTTGGTTGGCCTGAACAAACACCAGATTTAAAAGCTTATTATCCTGGGAGTTTATTAGAAACTGGGCATGATATTATATTTTTCTGGGTTGCACGCATGGTTATGATTGGTTTGAAATTAATGGGACAATTACCATTTCATACAGTCTATTTACATGCTATGGTTCGTGATGCTCATGGTAAAAAAATGAGTAAATCTTTGGGTAATGCAATTGATCCGGTAGATGTCATCAATGGAATATCTTTAGAAGATTTACAAAAACAGTTAGAACAAGGTAATCTTGATCCGAATGAATTAACACGTGCTCGTCAAGCTCAAGCGAAAGATTTTCCTAAAGGTATTCCTGAATGTGGAACTGACGCTCTCCGAATTGCTTTATGTGCTTATACAGCTCAAGGAAGAAATATCAATTTGGATATAATGCGTGTACAAGGCTATCGATTTTTCTGTAATAAACTATGGAATGCTGTTCGTTACGCATTATTTCATTGTTTAGATAAAGAATTTATCCCGCCAGATATGACTGATTTAAATAGTT ]
[+] EMBL CD162757 [TTTTAAAACAAGATAATGATGTATTAGATACATGGTTCTCTTCACAATTATTT CCATTCTCTGTATTTGGTTGGCCTGAACAAACACCAGATTTAAAAGCTTATTATCCTGGGAGTTTATTAGAAACTGGGCATGATATTATATTTTTCTGGGTTGCACGCATGGTTATGATTGGTTTGAAATTAATGGGACAATTACCATTTCATACAGTCTATTTACATGCTATGGTTCGTGATGCTCATGGTAAAAAAATGAGTAAATCTTTGGGTAATGCAATTGATCCGGTAGATGTCATCAATGGAATATCTTTAGAAGATTTACAAAAACAGTTAGAACAAGGTAATCTTGATCCGAATGAATTAACACGTGCTCGTCAAGCTCAAGCGAAAGATTTTCCTAAAGGTATTCCTGAATGTGGAACTGACGCCCTCCGAATTGCTTTATGTGCTTATACAGCTCAAGGAAGAAATATCAATTTGGATATAATGCGTGTACAAGGCTATCGATTTTTCTGTAATAAACTATGGAATGCTGTTCGTTACGCATTATTTCATTGTTTAGAATAAGAATTTATCCCGCCAGATATGACTGATTTAAATA ]
[-] EMBL CD162988 [ aaTATTTCCCATTCTCTGTATTTGGTTGGCCTGAACAAACACCAGATTTAAAAGCTTATTATCCTGGGGGTTTATTAGAAACTGGGCATGATATTATATTTTTCTGGGTTGCACGCACGGTTATGATTGGTTTGAAATTAATGGGACAATTACCATTTCATACAGTCTATTTACATGCTATGGTTCGTGATGCTCATGGTAAAAAAATGAGTAAATCTTTGGGTAATGCAATTGATCCGGTAGATGTCATCAATGGAATATCTTTAGAAGATTTACAAAAACAGTTAGAACAAGGTAATCTTGATCCGAATGAATTAACACGTGCTCGTCAAGCTCAAGCGAAAGATTTTCCTAAAGGTATCCCTGAATGTGGAACTGACGCTCTCCGAATTGCTTTATGTGCTTATACAGCTCAAGGAAGAAATATCAATTTGGATATAATGCGTGTACAAGGCTATCGATTTTTCTGTAATAAACTATGGAATGCTGTTCGTTACGCATTATTTCATTGTTTAGATAAAGAATTTATCCCGCCAGATATGACTGATTCAAATAGTTTATTTAAACAATTCATACAACATA]
consensusID : consensus_9709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 548 fasta sequence
[TTGAAATATGATAAGCAGGAATACGATGTCCCCACCATAACTGTCGAGAAATACACCAATCATGACAATCTTTAAGCCAACTATTCCATGTACGAATATGAAAACTGGGAATAATACGTAAGCGACCTTCCGATACCTCCTTCATTGCCGCATTAGCCATATCCTGACAACGTAGGTACCATTGCGGTTTCAACATAGGTTCAACAATATCTTTGCTTCGAGAACATATCGGTACAATCATAGGATTATCTTTTTCACCTCTATACAAGCCTAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCAAATCTGGGACCTGCAGCAGATGTCATCAGACCATCTTCACCAATTACTATTACAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATCAACAAATGTATCACCAACGATTGGAATTAATTGTGAAGAGAACCATGTATCTAATACATCATTATCTTGTTTTAAA]
[+] EMBL CD162758 [TTGAAATATGATAAGCAGGAATACGATGTCCCCACCATAACTGTCGAGAAATACACCAATCATGACAATCTTTAAGCCAACTATTCCATGTACGAATATGAAAACTGGGAATAATACGTAAGCGACCTTCCGATACCTCCTTCATTGCCGCATTAGCCATATCCTGACAACGTAGGTACCATTGCGGTTTCAACATAGGTTCAACAATATCTTTGCTTCGAGAACATATCGGTACAATCATAGGATTATCTTTTTCACCTCTATACAAGCCTAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCAAATCTGGGACCTGCAGCAGATGTCATCAGACCATCTTCACCAATTACTATTACAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATCAACAAATGTATCACCAACGATTGGAATTAATTGTGAAGAGAACCATGTATCTAATACATCATTATCTTGTTTTAAA]
[-] EMBL CD115887 [ ATGATAAGCAGGAATACGATGTCCCCACCATAACTGTCGAGAAATACACCAATCATGACAATCTTTAAGCCAACTATTCCATGTACGAATATGAAAACTGGGAATAATACGTAAGCGACCTTCCGATACCTCCTTCATTGCCGCATTAGCCATATCCTGACAACGTAGGTACCATTGCGGTTTCAACATAGGTTCAACAATATCTTTGCTTCGAGAACATATCGGTACAATCATAGGATTATCTTTTTCACCTCTATACAAGCCTAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCAAATCTGGGACCTGCAGCAGATGTCATCAGACCATCTTCACCAATTACTATTACAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATTAACAAATGTATCACC ]
[-] EMBL CD155518 [ TCGAGAAATACACCAATCATGACAATCTTTAAGCCAACTATTCCATGTACGAATATGAAAACTGGGAATAATACGTAAGCGACCTTCCGATACCTCCTTCATTGCCGCATTAGCCATATCCTGACAACGTAGGTACCATTGCGGTTTCAACATAGGTTCAACAATATCTTTGCTTCGAGAACATATCGGTACAATCATAGGATTATCTTTTTCACCTCTATACAAGCCTAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCAAATCTGGGACCTG ]
[-] EMBL CD152687 [ GTACAATCATAGGATTATCTTTTTCACCTCTATACAAGCATAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCACGAATCTGTGAAGTCCTTCAAATGTGGGACCTGCAGCAGATGTCATCAG ]
consensusID : consensus_9709#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence
[CCATATCCTGACAACGTAGGTACCATTGCGGTTTCAACATAGGTTCAACAATATCTTTGCTTCGAGAACATATCGGTACAATCATAGGATTATCTTTTTCACCTCTANACAAGCGTAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCAAATCTGGGACCTGCAGCAGATGTCATCAGACCATCTTCACCAATTACTATTACAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATCAACAAATGTATCACCCCCGATTGGAATTAATCTATCCGGAATAAGAGGATGCTTGATTAGGCGACCAATTAAATGTCGATAACGATTATCGTCAGGATGTACAGCAACGCCCGTATCACCTAACATTGTTTCAAG-TCGTGTGGTTGCGACGACAATTTCAGTGAACGTGCCAGCATTTATGAAAATCGAATTNCCCGCGAAGCGCCA]
[-] EMBL CD115764 [CCATATCCTGACAACGTAGGTACCATTGCGGTTTCAACATAGGTTCAACAATATCTTTGCTTCGAGAACATATCGGTACAATCATAGGATTATCTTTTTCACCTCTANACAAGCGTAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCAAATCTGGGACCTGCAGCAGATGTCATCAGACCATCTTCACCAATTACTATTACAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATCAACAAATGTATCACCCCCGATTGGAATTAATCTATCCGGAATAAGAGGATGCTTGATTAGGCGACCAATTAAATGTCGATAACGATTATCGTCAGGATGTACAGCAACGCCCGTATCACCTAACATTGTTTCAAG TCGTGTGGTTGCGACGACAATTTCAGTGAACGTGCCAGCATTTATGAAAATCGAATTNCCCGCGAAGCGCCA]
[-] EMBL CD115796 [ AATCATAGGATTATCTTTTTCACCTCTATACAAGCATAATTCATCGAGAGCTTTCCGAACGGCATCCCGAGCCGCGAATCTTTGAAGTCCTTCAAATCTGGGACCTGCAGCAGATGTCATCAGACCATCTTCACCAATTACTATTACAGTAGGAAGTGAATGCCTTCTCCCAACTTCCCAATCATTATGATCAAGAGCAGGTGTTAATTTTACAGCACCAGTTCCGAAATTCGGATCAACAAATGTATCACCAACGATTGGAATTAATCTATCCGGAATAAGTGGATGCTTGATTAGGCGACCAATTAAATGTCGATAACGATTATCGTCAGGATGTACAGCAACGCCCGTATCACCTAACATTGTTTCAAGTTCGTGTGGTTGCGACGAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9709#2 --TTGAAATATGATAAGCAGGAATACGATGTCCCCACCATAACTGTCGAGAAATACACCA 58
consensus_9709#3 ------------------------------------------------------------
consensus_9709#0 CAGTAGGAAGTGA-ATGCCTTCTCCCAACTTCCCAATCATTATGATCATGAGCAGGTGTT 59
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ATCATGACAATCTTTAAGCCAACTATTCCATGTACGAATATGAAAACTGGGAATAATACG 118
consensus_9709#3 ------------------------------------------------------------
consensus_9709#0 AATTTTACAGCACCAGTTCCGAAATTCGGATTAACAAATGTATCACCAACGATTGGAATT 119
consensus_9709#1 --------------TTTTAAAACAAGATAATGATGTATTAGATACATGGTTCTCTTCACA 46
consensus_9709#2 TAAGCGACCTT--CCGATACCTCCTTCATTGCCGCATTAGCCATATCCTGACAACGTAGG 176
consensus_9709#3 ----------------------------------------CCATATCCTGACAACGTAGG 20
consensus_9709#0 AATCTATCCGGAATAAGTGGATGCTTGATTAGGCGACCAATTAAATGTCGATAACG--AT 177
consensus_9709#1 ATTATTTCCATTCTCTGTATTTGGTTGGCCTGAACAAACACCAGAT-TTAAAAGCTT-AT 104
* ** * * *
consensus_9709#2 TACCATTGCGGTTT-CAACATAGGTTCAACAA--TATCTTTGCTTCGAGA---ACATATC 230
consensus_9709#3 TACCATTGCGGTTT-CAACATAGGTTCAACAA--TATCTTTGCTTCGAGA---ACATATC 74
consensus_9709#0 TATCGTCAGGATGTACAGCAACGCCCGTATCACCTAACATTGTTTCAAGT----CGTGTG 233
consensus_9709#1 TATCCTGGGAGTTTATTAGAAACTGGGCATGATATTATATTTTTCTGGGTTGCACGCATG 164
** * * * * * * * * ** * * * *
consensus_9709#2 GGTACAATCA---TAGGATTA---TCTTTTTCACCTCTATACAAGCCTAATTCATCGAGA 284
consensus_9709#3 GGTACAATCA---TAGGATTA---TCTTTTTCACCTCTANACAAGCGTAATTCATCGAGA 128
consensus_9709#0 GTTGCGACGA---CAATTTCAGTGTCTGATTCAGCTTTAC-TAGGATCAGGTAAAAGAGG 289
consensus_9709#1 GTTATGATTGGTTTGAAATTAATGGGACAATTACCATTTCATACAGTCTATTTACATGCT 224
* * * * * * * * * * * *
consensus_9709#2 GCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCA--AATCTGGGACCTG 342
consensus_9709#3 GCTTTCCGAACGGCATCCCGAGCCACGAATCTTTGAAGTCCTTCA--AATCTGGGACCTG 186
consensus_9709#0 G-TAAGCAAATGATGTAAT-AACTCCGAACGCTACAGGTTTATTAT-AGCCAGGAACACG 346
consensus_9709#1 ATGGTTCG--TGATGCTCATGGTAAAAAAATGAGTAAATCTTTGGGTAATGCAATTGATC 282
* * ** * * * *
consensus_9709#2 CAGCAGATGTCATC---AGACCATCTTCACCAA--TTACTATTACAGTAGGAAGTGAATG 397
consensus_9709#3 CAGCAGATGTCATC---AGACCATCTTCACCAA--TTACTATTACAGTAGGAAGTGAATG 241
consensus_9709#0 AAGTAAAGTACGTCC--AGAAAGTTCTTGTTTA--T--CTACTTCAATATCTGAT--ATG 398
consensus_9709#1 CGGTAGATGTCATCAATGGAATATCTTTAGAAGATTTACAAAAACAGTTAGAACAAGGTA 342
* * * * ** ** * * * * * ** * *
consensus_9709#2 --CCTTCTCCCAACTTCCCAAT-CATTATGATCATGAGCAGGTGTTAATT--TTACAGCA 452
consensus_9709#3 --CCTTCTCCCAACTTCCCAAT-CATTATGATCATGAGCAGGTGTTAATT--TTACAGCA 296
consensus_9709#0 --GCTGAACGTAAAGTACAGGA-CCAATTGACCAACCGAAGGCTTCGATAAATTAAACCA 455
consensus_9709#1 ATCTTGATCCGAATGAATTAACACGTGCTCGTCAAGCTCAAGCGAAAGATTTTCCTAAAG 402
* * ** * * ** * * * *
consensus_9709#2 CCAGTTCCGAAATTCGGATCAACAAATGTATCACCAACGATTGGA-ATTAAT-TGT---G 507
consensus_9709#3 CCAGTTCCGAAATTCGGATCAACAAATGTATCACCCCCGATTGGA-ATTAATCTATCCGG 355
consensus_9709#0 TCATTGTATAAACGAATAAAAGCCTCTGTAACAGCTTTACTCATAGATGGATCCATAGTG 515
consensus_9709#1 GTATTCCTGAATGTGGAACTGACGCTCTCCGAATTGCTTTATGTGCTTATACAGCTCAAG 462
* * ** * * * * * * *
consensus_9709#2 AAGAGAACCATGTATCTAATACATCATTATCTTGTTTTAAA------------------- 548
consensus_9709#3 AATAAGAGGATGC-TTGATTAGGCGACCAATTAAATGTCGATAACGATTAT-CGTCAGGA 413
consensus_9709#0 AATCTAGCTCGAGACCAATCACAAGAACTTCCTAAAGCTCTGAGTTGTTGA-TAAATGCG 574
consensus_9709#1 GAAGAAATATCAATTTGGATATAATGCGTGTACAAGGCTATCGATTTTTCTGTAATAAAC 522
* *
consensus_9709#2 ------------------------------------------------------------
consensus_9709#3 TGTACAGCAACGCCCGTATCACCTAACATTGTT--TCAAGTCGTGTGGTTGCGACGACAA 471
consensus_9709#0 ATCACCTCTTCTTTCCATTTCCAAACTTCTTTC--ATAAATTCATCACGTCCAATATCAT 632
consensus_9709#1 TATGGAATGCTGTTCGTTACGCATTATTTCATTGTTTAGATAAAGAATTTATCCCGCCAG 582
consensus_9709#2 ------------------------------------------------------------
consensus_9709#3 TT-TCAGTGAACGTGCCAGCATTTATGAAAATCGAATTNCCCGCGAAGCGCCA------- 523
consensus_9709#0 GT-CGAGTGAGTTTTTTCTCTCTCCACAACTTTTTTTCTACCACTACCTGAGTGGCGATA 691
consensus_9709#1 ATATGACTGATTTAAATAGTTTATTTAAACAATTCATACAACATA--------------- 627
consensus_9709#2 ------------------------------------------------------------
consensus_9709#3 ------------------------------------------------------------
consensus_9709#0 CCGGCGTGGTCACATCCAGGAACCCAGAGTGTAACTTTTCCATTCATTCTGTGCCATCGT 751
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 -----------------------------------------------
consensus_9709#3 -----------------------------------------------
consensus_9709#0 GTAATAGCATCTTCAACGCTGTTTGTCAAAGCGTGGCCCAAATGCAA 798
consensus_9709#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||