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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[NCGGCCTCCGGTACCCCGCTCTAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTAGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACACCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGCTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGC]
[+] EMBL CD066044 [NCGGCCTCCGGTACCCCGCTCTAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTAGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACACCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGCTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGC]
consensusID : consensus_9744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence
[CGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCGCTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG]
[+] EMBL CD071926 [CGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCGCTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG]
[-] EMBL CD059645 [ gCACC ACAC CTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCATC CGCACC ACAC CTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTT ]
consensusID : consensus_9744#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[TTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTGCATCTCACCGACACGCTC]
[+] EMBL CD135341 [TTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTGCATCTCACCGACACGCTC]
consensusID : consensus_9744#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence
[ACTGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCT-GC-GTCCGCT-CTAACAGTACCTAGGGTACCGT]
[-] EMBL CD168894 [ACTGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCT GC GTCCGCT CTAACAGTACCTAGGGTACCGT]
[-] EMBL CD168573 [ ATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGTCTGGCAGT CGATGCTGTGGGTACCGAGct ]
consensusID : consensus_9744#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[GACTACTGTCTGGCGTGCGCGAGTCGGGCGTCCGTTGCACGTGCGGATACGCCGGTCGGCCAAGGTCACCAATATGTCCGCGCGCCATGCTGCACCGGACACGCTCAACCAAATCGTTGCCCGGTTCCGGTTGTGGCTGCAGTCTCTGCAAGCGCCTCAGACTGCCAAGTCGACTGGAGCGAACACAGACACACGTTGCGATTCTACCTGTGGTAGCACTTCACTTTGTGCGTCCGCTGTCAACTTGACCCAATGTCTCACCGAACACTTCGACTACCGACGCGGCGTCCGTCCCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCAGCGACACGCTCAACCAATCGTTCCCGTTCC]
[-] EMBL CD060346 [GACTACTGTCTGGCGTGCGCGAGTCGGGCGTCCGTTGCACGTGCGGATACGCCGGTCGGCCAAGGTCACCAATATGTCCGCGCGCCATGCTGCACCGGACACGCTCAACCAAATCGTTGCCCGGTTCCGGTTGTGGCTGCAGTCTCTGCAAGCGCCTCAGACTGCCAAGTCGACTGGAGCGAACACAGACACACGTTGCGATTCTACCTGTGGTAGCACTTCACTTTGTGCGTCCGCTGTCAACTTGACCCAATGTCTCACCGAACACTTCGACTACCGACGCGGCGTCCGTCCCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCAGCGACACGCTCAACCAATCGTTCCCGTTCC]
consensusID : consensus_9744#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence
[TCAAATACGCCTTCACCAAGTTCACCATATTCCGCGTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTATGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTNTGCGTCCGTTCCACCTTGCCAGGTAAGAGCCCAACGA]
[-] EMBL CD067700 [TCAAATACGCCTTCACCAAGTTCACCATATTCCGCGTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTATGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTNTGCGTCCGTTCCACCTTGCCAGGTAAGAGCCCAACGA]
consensusID : consensus_9744#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 158 fasta sequence
[ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC------GCAGTCGGTGATG-GCAGGGTACCGAGCTCG]
[-] EMBL CD168526 [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC GCAGTCGGTGATG GCAGGGTACCGAGCTCG]
[-] EMBL CD168522 [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC GCAGTCGGTGAAGTGCAGGGTACCGAGCTC ]
[-] EMBL CD168586 [ ATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGATCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGGCAGTCGGTGATG GCAGGGTACCGAGCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9744#0 NCGGCCTCCGGTACCCCGCTCTAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTG 60
consensus_9744#2 ------------------------------------------------------------
consensus_9744#4 ------------------------------------------------------------
consensus_9744#5 ------------------------------------------------------------
consensus_9744#1 ------------------------------------------------------------
consensus_9744#3 ------------------------------------------------------------
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 CAAGCGCCTCAGACTCCAATTCGACTAGAGCGAACACAGACACACGTTCCGATTCAACCT 120
consensus_9744#2 -------------------------TTCTGCGTCCGCTTCAACTTGCCCCAAT---GTCT 32
consensus_9744#4 ------------------------------------------------------------
consensus_9744#5 ------------------------------------------------------------
consensus_9744#1 ------------------------------------------------------------
consensus_9744#3 ------------------------------------------------------------
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 GTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTT 180
consensus_9744#2 CACCGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTT 92
consensus_9744#4 -------------------------------------------------GACTACTGTCT 11
consensus_9744#5 ------------------------------------------------------------
consensus_9744#1 ------------------------------------------------------------
consensus_9744#3 ------------------------------------------------------------
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 CGACTGC-CGACTCGG-CTTCCGTCTCACCTTCAAATACACC--TTCACCAACTTCACCA 236
consensus_9744#2 CGACTGC-CGACTCGG-CTTCCGTCTCACCTTCAAATACGCC--TTCACCAACTTCACCA 148
consensus_9744#4 GGCGTGCGCGAGTCGGGCGTCCGTTGCACGTGCGGATACGCCGGTCGGCCAAGGTCACCA 71
consensus_9744#5 -------------------------------TCAAATACGCC--TTCACCAAGTTCACCA 27
consensus_9744#1 --CGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCC--TTCACCAACTTCACCA 56
consensus_9744#3 ------------------------------------------------------------
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 -TAT-TCCGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 287
consensus_9744#2 -TAT-TCCGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 199
consensus_9744#4 ATATGTCCGCGCGCCATGCTGCACCGGACACGCTCAACCAAATCGTTGCCCGGTTCCGGT 131
consensus_9744#5 -TAT-TCCGC-GTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 78
consensus_9744#1 -TAT-TCCGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 107
consensus_9744#3 -----ACTGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 48
consensus_9744#6 ------------------------------------ACCAA-TCGTTCCC--GTTCCGGT 21
***** ***** ** ********
consensus_9744#0 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 345
consensus_9744#2 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 257
consensus_9744#4 TGTGGCTGCAGTCTCTGCAAGCGCCTCAGACTGCCAAGTCGACTGGAGCGAACACAGACA 191
consensus_9744#5 TGTG-CTGCAGTCTATGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 136
consensus_9744#1 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 165
consensus_9744#3 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 106
consensus_9744#6 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 79
**** ********* ***************** **** **********************
consensus_9744#0 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCT-T-CAACTTGCCC 403
consensus_9744#2 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCT-T-CAACTTGCCC 315
consensus_9744#4 CACGTTGCGATTCTACCTGTGGTAGCACTTCACTTTGTGCGTCCGCTGT-CAACTTGACC 250
consensus_9744#5 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTNTGCGTCCGTT-C-CACCTTGCCA 194
consensus_9744#1 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC--AACTTGCCC 223
consensus_9744#3 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC--AACTTGCCC 164
consensus_9744#6 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCGCAGTCGGTGA 139
****** ****** ****** ** *********** ******** * * *
consensus_9744#0 CA-ATGCTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACG 462
consensus_9744#2 CA-ATG-TCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACG 373
consensus_9744#4 CA-ATG-TCTCACCGAACACTTCGACTACCGACGCGGCGTCCGTCCCACCTTCAAATACG 308
consensus_9744#5 GGTAAGAGCCCAACGA-------------------------------------------- 210
consensus_9744#1 CA-ATG-TCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTC------------- 268
consensus_9744#3 CA-ATG-TCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACG 222
consensus_9744#6 TG-GCA-GGGTACCGAGCTCG--------------------------------------- 158
* ***
consensus_9744#0 CCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCC 522
consensus_9744#2 CCTTCACCAACTTCACCATATTCCGCCTGCATCTCACCGACACGCTC------------- 420
consensus_9744#4 CCTTCACCAACTTCACCATATTCCGCCTCCATCTCAGCGACACGCTCAACCAATCGTTCC 368
consensus_9744#5 ------------------------------------------------------------
consensus_9744#1 -----------------------------CATCTCACCGACACGCTCAACCAATCGTTCC 299
consensus_9744#3 CCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCC 282
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 CGTTCCGGTTGTGC---------------------------------------------- 536
consensus_9744#2 ------------------------------------------------------------
consensus_9744#4 CGTTCC------------------------------------------------------ 374
consensus_9744#5 ------------------------------------------------------------
consensus_9744#1 CGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCCAGACTCCAATTCGACTGGAGCGAAC 359
consensus_9744#3 CGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAAC 342
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 ------------------------------------------------------------
consensus_9744#2 ------------------------------------------------------------
consensus_9744#4 ------------------------------------------------------------
consensus_9744#5 ------------------------------------------------------------
consensus_9744#1 ACAGACACACGTTCCGATTCAACCTGTTCTACCGCTTCACTTTCTGCGTCCGCTTCAACT 419
consensus_9744#3 ACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTCTAACA 402
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 ------------------------------------------------------------
consensus_9744#2 ------------------------------------------------------------
consensus_9744#4 ------------------------------------------------------------
consensus_9744#5 ------------------------------------------------------------
consensus_9744#1 TGCCCCAATGTCTCACGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCT 479
consensus_9744#3 GTACCTAGGGTACCGT-------------------------------------------- 418
consensus_9744#6 ------------------------------------------------------------
consensus_9744#0 -----
consensus_9744#2 -----
consensus_9744#4 -----
consensus_9744#5 -----
consensus_9744#1 CACCG 484
consensus_9744#3 -----
consensus_9744#6 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||