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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9763#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 940 fasta sequence
[ATTTGCACGAGGCCGCTGGACTAGTGTCCGTCCCAGTTGTTTTCAGATGGCCAAATGGATGCTCGGCTGGCGTCGCCGCCCAGCATAGTCAGGATTACGGTGCGTGGTACGCTAGTTGTCCTGGTCTTAAAGTTCTGGCCCCCTACAATTGTGAAGATTGTCGAGGTCTCCTGAAATCGGCTATACGTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATATGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGCGTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAG-TAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAGATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTAT-CCTGATACACATAATATTGTAACTACTGTAAAGATGGTTAAGAATATT-CAGTAAGCAGTTGGTTTTCAACT-AATCAACTGCCTTTCGTACTAGCTATGCAAGCTACCTACTAGTTTATTATTTAAAATG-TTCTTTCACTATTGATGCATCTCAGTATACTTGTGATTTGTAAAATTT-AATGTGTTTCCACTA-TTACAACAG-CAACAACTACTACT-AATACAACTTATTTAAATGTCTAGCAATTTCGCTTCGGCTGTTG-TTTTACATAATGTAAACCAGTTAGTCAATAAAGTATTTTT]
[+] EMBL CD082116 [ATTTGCACGAGGCCGCTGGACTAGTGTCCGTCCCAGTTGTTTTCAGATGGCCAAATGGATGCTCGGCTGGCGTCGCCGCCCAGCATAGTCAGGATTACGGTGCGTGGTACGCTAGTTGTCCTGGTCTTAAAGTTCTGGCCCCCTACAATTGTGAAGATTGTCGAGGTCTCCTGAAATCGGCTATACGTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATATGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGCGTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAG TAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAGATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTAT CCTGATACACATAATATTGTAACTACTGTAAAGATGGTTAAGAATATTNCAGT AGCAGTTGGTTNTC ACTAAATC ACTGCCTTTCGTACTAGCTATGNCAGCTACCTACTAGTTNATTATNTAAAATGNTNNCTTCACTATTGATGCATCTCAGTATACTTGNGAATTGTAAAATTTNAATGTG TTNCACTATTTAC ACAG C AC ACTACTACT ATAC ACTTA TTAAATGTCTAGCA TTCGC TCCGCTG TG TTNAC T ATGT ACCAG TAGTC ATAAgat ]
[+] EMBL CD127555 [ gcaaatagtAGGTCTCCTGAAATCTGCTATACGTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATGTGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGCGTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAG TAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAGATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTAT CCTGATACACATAATATTGTAACTACTGTAAAGATGGTTAAGAATATT CAGTAAGCAGTTGGTTTTCAACT AATCAACTGCCTTTCGTACTAGCTATGCAAGC ]
[+] EMBL CD127979 [ TCGGTTATACGTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATATGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGCGTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAG TAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAGATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTAT CCTGATACACATAATATCGTAACTACTGTAAAGATGGTTAAGAATATT CAGTAAGCAGTTGGTTTTCAACT AATCAACTGCCTTTCGTACTAGCTATGCAAGC ]
[+] EMBL CD080516 [ ATTATATGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGCGTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAG TAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAGATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTAT CCTGATACACATAATATTGTAACTACTGTAAAGATGGTTAAGAATATT CAGTAAGCAGTTGGTTTTCAACT AATCAACTGCCTTTCGTACTAGCTATGCAAGCTACCTACTAGTTTATTATTTAAAATG TTCTTTCACTATTGATGCATCTCAGTATACTTGTGATTTGT AAATTT AATGTGTTTCCACTA TTACAACAGNNCAC ACTACTACTAAATAC ACTTATTTAAATGTCTAGNCATNTCGCTTCGGCTGGTGNTNNTACAT ATGT AACCAGNTAGTCAAATAAGTATTTT ]
[+] EMBL CD145857 [ AAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGCGTTCCTTGCGGGCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAGCGAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATA ]
[-] EMBL CD075731 [ TCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGCGTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAG TAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAGATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTAT CCTGATACACATAATATTGTAACTACTGTAAAGATGGTTAAGAATATT CAGTAAGCAGTTGGTTTTCAACT AATCAACTGCCTTTCGTACTAGCTATGCAAGCTACCTACTAGTTTATTATTTAAAATG TTCTTTCACTATTGATGCATCTCAGTATACTTGTGATTTGTAAAATTT AATGTGTTTCCACTA TTACAACAG CAACAACTACTACT AATACAACTTATTTAAATGTCTAGCAATTTCGCTCCGGCTGTTG TTTTACATAATGTAAACCAGTTAGTCAATAAAGTATTTTT]
[-] EMBL CD074428 [ TGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATNTGCGTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATTTAG TAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCGTCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAGATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTAT CCTGATACACATAATATTGTAACTACTGTAAAGATGGTTAAGAATATT CAGTAAGCAGTTGGTTTTCAACT AATCAACTGCCTTTCGTACTAGCTATGCAAGCTACCTACTAGTTTATTATTTAAAATG TTCTTTCACTATTGATGCATCTCAGTATACTTGTGATTTGTAAAATTT AATGTGTTTCCACTA TTACAACAG CAACAACTACTACT AATACAACTTATTTAAATGTCTAGCAATTTCGCTTCGGCTGTTG TTTTACATAATGTAAACCAGTTAGTCAATAAAGTATTTTT]
[+] EMBL CD127084 [ GATGCTCCAGGTTTACGAGTGACTGGCGCACATATTCCAATGCCATATGCTCTTAATCTGGAGCGCGCTTCTTAT CCTGATACACATAATATTGTAACT ]
[-] EMBL AA999572 [ ATATGCTCTTAATCTGGGGCGGGCTTCTTATCCCTGATACACATAATATTGTAACTACTGTAAAGATGGTTAAGAATATT CAGTAAGCAGTTGGTTTTCAACT AATCAACTGCCTTTCGTACTAGCTATGCAAGCTACCTACTAGTTTATTATTTAAAATG TTCTTTCAGGGGTGATGCATCTCAGTATACTTGTGATTTGTAAAATTT AATGTGTTTCCACTA TTACAACAG CAACAACTACTACT AATACAACTTATTTAAATGTCTAGCAATTTCGCTTCGGCTGTTG TTTTACATAATGTAAACCAGTTAGTCAATAAAGTATNTTT]
consensusID : consensus_9763#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 530 fasta sequence
[ATGGGGTTTGCCGGAGTTGCTGTTGCGAGCAGCTATGGCTGGTCTCAAGCCTATATGTGAATTCATGACTTTTAATTTCGCTATGCAGGCTATAGACCAAATAATCAATTCTGCTGCAAAATCAGCGTACATGTCCGCTGGACTAGTGTCCGTCCCAGTTGTTTTCAGAGGGCCAAATGGATGCTCGGCTGGCGTCGCCGCCCAGCATAGTCAGGATTACGGTGCGTGGTACGCTAGTTGTCCTGGTCTTAAAGTTCTGGCCCCCTACAATTGTGAAGATTGTCGAGGTCTCCTGAAATCGGCTATACGGTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATATGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTA]
[+] EMBL CD084180 [ATGGGGTTTGCCGGAGTTGCTGTTGCGAGCAGCTATGGCTGGTCTCAAGCCTATATGTGAATTCATGACTTTTAATTTCGCTATGCAGGCTATAGACCAAATAATCAATTCTGCTGCAAAATCAGCGTACATGTCCGCTGGACTAGTGTCCGTCCCAGTTGTTTTCAGAGGGCCAAATGGATGCTCGGCTGGCGTCGCCGCCCAGCATAGTCAGGATTACGGTGCGTGGTACGCTAGTTGTCCTGGTCTTAAAGTTCTGGCCCCCTACAATTGTGAAGATTGTCGAGGTCTCCTGAAATCGGCTATACGGTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATATGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTC ]
[-] EMBL CD198527 [ TCGCTATGCAGGCTATAGACCAAATAATCAATTCTGCTGCAAAATCAGCGTACATGTCCGCTGGACTAGTGTCCGTCCCAGTTGTTTTCAGAGGGCCAAATGGATGCTCGGCTGGCGTCGCCGCCCAGCATAGTCAGGATTACGGTGCGTGGTTCGCTAGTTGTCCTGGTCTTAAAGTTCTGGCCCCCTACAATTGTGAAGATTGTCGAGGTCTCCTGAAATCGGCTATAC GTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATGTGGACAGTCATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTAAAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTTGCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9763#0 ------------------------------------------------------------
consensus_9763#1 ATGGGGTTTGCCGGAGTTGCTGTTGCGAGCAGCTATGGCTGGTCTCAAGCCTATATGTGA 60
consensus_9763#0 ------------------------------------------------------------
consensus_9763#1 ATTCATGACTTTTAATTTCGCTATGCAGGCTATAGACCAAATAATCAATTCTGCTGCAAA 120
consensus_9763#0 ATTTGC--ACGAGGCCGCTGGACTAGTGTCCGTCCCAGTTGTTTTCAGATGGCCAAATGG 58
consensus_9763#1 ATCAGCGTACATGTCCGCTGGACTAGTGTCCGTCCCAGTTGTTTTCAGAGGGCCAAATGG 180
** ** ** * *********************************** **********
consensus_9763#0 ATGCTCGGCTGGCGTCGCCGCCCAGCATAGTCAGGATTACGGTGCGTGGTACGCTAGTTG 118
consensus_9763#1 ATGCTCGGCTGGCGTCGCCGCCCAGCATAGTCAGGATTACGGTGCGTGGTACGCTAGTTG 240
************************************************************
consensus_9763#0 TCCTGGTCTTAAAGTTCTGGCCCCCTACAATTGTGAAGATTGTCGAGGTCTCCTGAAATC 178
consensus_9763#1 TCCTGGTCTTAAAGTTCTGGCCCCCTACAATTGTGAAGATTGTCGAGGTCTCCTGAAATC 300
************************************************************
consensus_9763#0 GGCTATACG-TGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATATGGACAGT 237
consensus_9763#1 GGCTATACGGTGATCCGGATCCAGTGGTTCATTTGGAGAGCGAATTATTATATGGACAGT 360
********* **************************************************
consensus_9763#0 CATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTA 297
consensus_9763#1 CATTTGATGTTTCAGATGAAGCATTGTCTTCAGACTTCTTGATTCCTATAGGTCAAGCTA 420
************************************************************
consensus_9763#0 AAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTT 357
consensus_9763#1 AAGTTGAAAGGGAAGGGAAAGATGTTACTCTCGTTAGCTACAGTTTAGGTGTGGGTACTT 480
************************************************************
consensus_9763#0 GCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTAATTAATTTGC 417
consensus_9763#1 GCCTTGCTGCTGCTGAAGAATTATCAAAACTAGGTATCACTGCCGAGGTA---------- 530
**************************************************
consensus_9763#0 GTTCCTTGCGGCCAATGGATGAAGAAACAATATTTCAATCCGTTAAAAAGACACATTATT 477
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 TAGTAACCGTGGAAAATGGTTGGCCTGTATGTGGTATTGGTGCTGAGATATGTGCTCGCG 537
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 TCATGGAAACGGATACCTTCAACTACTTGGATGCTCCAGTTTTACGAGTGACTGGCGCAG 597
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 ATATTCCAATGCCATATGCTCTTAATCTGGAGCGTGCTTCTTATCCTGATACACATAATA 657
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 TTGTAACTACTGTAAAGATGGTTAAGAATATTCAGTAAGCAGTTGGTTTTCAACTAATCA 717
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 ACTGCCTTTCGTACTAGCTATGCAAGCTACCTACTAGTTTATTATTTAAAATGTTCTTTC 777
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 ACTATTGATGCATCTCAGTATACTTGTGATTTGTAAAATTTAATGTGTTTCCACTATTAC 837
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 AACAGCAACAACTACTACTAATACAACTTATTTAAATGTCTAGCAATTTCGCTTCGGCTG 897
consensus_9763#1 ------------------------------------------------------------
consensus_9763#0 TTGTTTTACATAATGTAAACCAGTTAGTCAATAAAGTATTTTT 940
consensus_9763#1 -------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||