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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 729 fasta sequence
[CCCTCGGGCCAANAATTCGGCACGAGGTTAACCATTAACCATGAAGCCATTATGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC-GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAG-CAATATACTA]
[+] EMBL CD082667 [CCCTCGGGCCAANAATTCGGCACGAGGTTAACCATTAACCATGAAGCCATTATGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTNTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAAATTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAG CAATATACTA]
[+] EMBL AI977652 [ TAACCATTAACCATGAAGCCATTATGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTAT ]
[+] EMBL CD078534 [ TGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATANCACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCT AAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCCAATATACT ]
[+] EMBL CD079252 [ AAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTAAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAGC CAATATACT ]
consensusID : consensus_9814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 640 fasta sequence
[GCAGGCCAGAATTCGGCACGAGGACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA-CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT-ATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCAAATATACTAT]
[+] EMBL CD082533 [GCAGGCCAGAATTCGGCACGAGGACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT ATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCANATATACT ]
[-] EMBL CD076129 [ CTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATAATAATTTCCTAATTTAA ]
[-] EMBL CD073980 [ GTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCCCAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACATAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACCAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT ATTATTTCCTAATTTAATCGACTACGTATGAAATATTTACTATTTGTGATCGGTAAGCAAAAAAACTA ]
[-] EMBL BG930374 [ CATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGAg ]
[-] EMBL CD077148 [ GCTATGACCCACCCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTT AATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT ATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCAAATATACTAT]
consensusID : consensus_9814#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[TGTTTAACTTCTATATAAATAATCATTATATCATCATATTAGAATAGTAATATTAACCATTAACCATGAAGCCATTATGTATATTATTGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTCCACCAACAAATAAGTCACTCGAGTGAGAGAATTCAAAATCTTTGCATGGAGACCGGCC]
[+] EMBL SM58070 [TGTTTAACTTCTATATAAATAATCATTATATCATCATATTAGAATAGTAATATTAACCATTAACCATGAAGCCATTATGTATATTATTGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTCCACCAACAAATAAGTCACTCGAGTGAGAGAATTCAAAATCTTTGCATGGAGACCGGCC]
consensusID : consensus_9814#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence
[ATTCGGCACGAGTGGTTATACATTTTAAACTGAATAATGTTTCTTTAAAAAAAAAAACTTTTAAATCATTCAAATCTTTACCTGTTTTCTTGTTTGCCTCACATATAGAATGCTGGATTTTGTACAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGGAAATATCTACTATTTCTGATCGCTAAGCAAATAT]
[+] EMBL AI014215 [ATTCGGCACGAGTGGTTATACATTTTAAACTGAATAATGTTTCTTTAAAAAAAAAAACTTTTAAATCATTCAAATCTTTACCTGTTTTCTTGTTTGCCTCACATATAGAATGCTGGATTTTGTACAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGGAAATATCTACTATTTCTGATCGCTAAGCAAATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9814#0 ----------------------CCCTCGGGCCAANAATTCGGCACG---AGGTTAACCAT 35
consensus_9814#2 TGTTTAACTTCTATATAAATAATCATTATATCATCATATTAGAATAGTAATATTAACCAT 60
consensus_9814#1 ------------------------------------------------------------
consensus_9814#3 -------ATTCGGCACGAGTGGTTAT-ACATT-TTAAACT-GAATA---ATGTTT-CTTT 46
consensus_9814#0 TAACCATGAAGCCATTATGT-ATATTAT-GCTTACTTATTTCATTAATATTCTATGTGAA 93
consensus_9814#2 TAACCATGAAGCCATTATGT-ATATTATTGCTTACTTATTTCATTAATATTCTATGTGAA 119
consensus_9814#1 ---------------------------------------------------------GCA 3
consensus_9814#3 AAAAAAAAAAACTTTTAAATCATTCAAATCTTTACCTGTTTTCTTGTTTGCCT---CACA 103
*
consensus_9814#0 TAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAA- 152
consensus_9814#2 TAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAA- 178
consensus_9814#1 GGCCAGAATTCGGCACGA-GGACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAA- 61
consensus_9814#3 TA-TAGAATGCTGGATTTTGTACAGAAGC--------CTAAAATATCAATGTGGATGAAT 154
* *** * *** * * * *** *** * ** ***
consensus_9814#0 GTCAA-CCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAA-GCTAAGAA 210
consensus_9814#2 GTCAAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAA-GCTAAGAA 237
consensus_9814#1 GTCAA-CCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAA-GCTAAGAA 119
consensus_9814#3 ATTATTTCCTAATTTAATCGACTACGTATGGAAATATCTACTATTTCTGATCGCTAAGCA 214
* * * * * *** * *** * ** * ****** *
consensus_9814#0 TATAATTTTAAGTTCATCAACAAATAAGTCAATC-AGTGATAGAATTCAAAATCTTTGCA 269
consensus_9814#2 TATAATTTTAAGTCCACCAACAAATAAGTCACTCGAGTGAGAGAATTCAAAATCTTTGCA 297
consensus_9814#1 TATAATTTTAAGTTCATCAACAAATAAGTCAATC-AGTGATAGAATTCAAAATCTTTGCA 178
consensus_9814#3 AATAT------------------------------------------------------- 219
***
consensus_9814#0 TGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATA 329
consensus_9814#2 TGGAGACCGGCC------------------------------------------------ 309
consensus_9814#1 TGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATA 238
consensus_9814#3 ------------------------------------------------------------
consensus_9814#0 TACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCT 389
consensus_9814#2 ------------------------------------------------------------
consensus_9814#1 TACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCT 298
consensus_9814#3 ------------------------------------------------------------
consensus_9814#0 ATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAAT 449
consensus_9814#2 ------------------------------------------------------------
consensus_9814#1 ATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAAT 358
consensus_9814#3 ------------------------------------------------------------
consensus_9814#0 CAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTA 509
consensus_9814#2 ------------------------------------------------------------
consensus_9814#1 CAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTA 418
consensus_9814#3 ------------------------------------------------------------
consensus_9814#0 ATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAG 569
consensus_9814#2 ------------------------------------------------------------
consensus_9814#1 ATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAG 478
consensus_9814#3 ------------------------------------------------------------
consensus_9814#0 TAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTT 629
consensus_9814#2 ------------------------------------------------------------
consensus_9814#1 TAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTT 538
consensus_9814#3 ------------------------------------------------------------
consensus_9814#0 GTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGT 689
consensus_9814#2 ------------------------------------------------------------
consensus_9814#1 GTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGT 598
consensus_9814#3 ------------------------------------------------------------
consensus_9814#0 ATGAAATATCTACTATTTCTGATCGCTAAGCAATATACTA-- 729
consensus_9814#2 ------------------------------------------
consensus_9814#1 ATGAAATATCTACTATTTCTGATCGCTAAGCAAATATACTAT 640
consensus_9814#3 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||