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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1177 fasta sequence
[TCGAGCCAANAATTCGGCACGAGGTATAAATTGATAAATTGGGATTAGTACATTGAATGAATAGGAATGATAAGTCATCAAACTGGACCAAGTATTACATTTCCTGATCGTATTAGCGCTGAAAATGATGCAGAACAATTACATAATGCTTGTAAAGGATTATCTACTGATGAGGAAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAATCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATGAGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGNTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAACCATTTATTGAAGCTGTACGAGAAGAACATCAGGAGATTTTCGCAGTTACTTTTGCATTATTGGAGATACTCTTTTTGGGATGATATAAAAATGTCTCTGGTATCATTGTAATGACAACTATTTCACTCACATGAGCTCATTTATTTATATCTATATATAAG]
[+] EMBL CD082605 [TCGAGCCAANAATTCGGCACGAGGTATAAATTGATAAATTGGGATTAGTACATTGAATGAATAGGAATGATAAGTCATCAAACTGGACCAAGTATTACATTTCCTGATCGTATTAGCGCTGAAAATGATGCAGAACAATTACATAATGCTTGTAAAGGATTATCTACTGATGAGGAAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAATCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAA ]
[-] EMBL CD190363 [ ACATTGAATGAATAGGAATGATAAGTCATCAAACTGGACCAAGTANTACATTTCCTGATCGTATAAGCGCTGAAAATGATGCAGAACAATTACATAATGC TGTAAAGGATTATCTACTGATGAGGAAACAATCACT AAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAGGACGTGATGAAGATCCACCAG ]
[+] EMBL CD185310 [ aAAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGCTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGACTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAG ]
[-] EMBL CD185123 [ AAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATT ]
[+] EMBL CD080059 [ GTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATGAGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGNTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAACCATTTATTGAAGCTGTACGAGAAGAACATCAGGAGATTTTCGCAGTTACTTTTGCATTATTGGAGATACTCTTTTTGGGATGATATAAAAATGTCTCTGGTATCATTGTAATGACAACTATTTCACTCACATGAGCTCATTTATTTATATCTATATATAAG]
consensusID : consensus_9824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1001 fasta sequence
[TCGGCTCGAGGACAAGAGAGACATTTCATAGACGATATAAAAAGGTTTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA-TTCTC--AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCATTAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAATGAATTACTT]
[+] EMBL CD081422 [TCGGCTCGAGGACAAGAGAGACATTTCATAGACGATATAAAAAGGTTTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTCTC AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATNTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGA ]
[-] EMBL CD076199 [ TTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTCTC AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCATTAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAATGAATTAC ]
[-] EMBL CD077054 [ TTTTAATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTTTC AGAACCATTTAGATCAGGGTTAAATACAATAATTATGGCATTGATGGATTTACGTCTGTTATTAATTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTTATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATAATTTGGTAAACCATTAATTGAAGCTGTACGAGAAAATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAAAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTTTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAAGGGATTAC ]
[-] EMBL CD075248 [ AAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTCTC AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCATTAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAATGAATTACTT]
[+] EMBL AI168876 [ GTTATATCGAAAAAATTTCACGTAGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAG TTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATC ATGTATCGTGAATATTTTGGT AACCATTAATTG AGCTGTACGAG AGATAC TC GG GGTTTTCGC AGTTAC TTTGG ATTATTGGGAG ATAACTC TTTTGGGGTATGAATAAAAAAtg ]
consensusID : consensus_9824#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[GCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATATACATAGTTGAAGTTATATCGAAAAAATCTCAGACCATTTAGATCAGGGTTAATACATGATATGCATGATGATTACGCGTGTAATAGTTGT]
[+] EMBL SMAA69094 [GCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATATACATAGTTGAAGTTATATCGAAAAAATCTCAGACCATTTAGATCAGGGTTAATACATGATATGCATGATGATTACGCGTGTAATAGTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9824#1 ------------------------------------------------------------
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 TCGAGCCAANAATTCGGCACGAGGTATAAATTGATAAATTGGGATTAGTACATTGAATGA 60
consensus_9824#1 ------------------------------------------------------------
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 ATAGGAATGATAAGTCATCAAACTGGACCAAGTATTACATTTCCTGATCGTATTAGCGCT 120
consensus_9824#1 ------------------------------------------------------------
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 GAAAATGATGCAGAACAATTACATAATGCTTGTAAAGGATTATCTACTGATGAGGAAACA 180
consensus_9824#1 ----------------------------------TCGGCTCGAGGACAAGAGAGACATTT 26
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 ATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTT 240
consensus_9824#1 CATAGACGATATAAAAAGGTTTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTAT 86
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 CATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTAT 300
consensus_9824#1 GAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATAT 146
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 GAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATAT 360
consensus_9824#1 AAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAA 206
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 AAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAA 420
consensus_9824#1 ATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCT 266
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 ATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCT 480
consensus_9824#1 TCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTA 326
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 TCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTA 540
consensus_9824#1 TTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCT 386
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 TTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAATCT 600
consensus_9824#1 ATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAA 446
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 ATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAA 660
consensus_9824#1 GATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAA 506
consensus_9824#2 ---------------------------GCAGGTAAAGGTGATTCTGATACATTCATAAAA 33
consensus_9824#0 GATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAA 720
*********************************
consensus_9824#1 ATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAA 566
consensus_9824#2 ATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAA 93
consensus_9824#0 ATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAA 780
************************************************************
consensus_9824#1 TACCATAATACAAT-AGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGG 625
consensus_9824#2 TACCATA-TACA-T-AGTTGAAGTTATATCGAAAAAAT-CTCAGA-CCATTTAGATCAGG 148
consensus_9824#0 TACCATAATACAATGAGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGG 840
******* **** * *********************** ****** **************
consensus_9824#1 GTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTA 685
consensus_9824#2 GTTAA-TACA-TGAT-ATG-CAT-GATGATTACGCGTGTAATAGTTGT------------ 191
consensus_9824#0 GTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTA 900
***** **** **** *** *** **** * *** * ** * **
consensus_9824#1 TGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACG 745
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 TGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACG 960
consensus_9824#1 ATGT-GAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCAT 804
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 ATGNTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAA-CCAT 1019
consensus_9824#1 TAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTAT 864
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 TTATTGAAGCTGTACGAGAAGA-ACATCAGGAGATTTTCGCA-GTTACTTTTG-CATTAT 1076
consensus_9824#1 TGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGT 924
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 TGGAGATA---CTCTTTTTGGGATG-----ATATAAAAATGTCTCTGG--TATCATTG-- 1124
consensus_9824#1 AAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATT 984
consensus_9824#2 ------------------------------------------------------------
consensus_9824#0 TAATGACAA-CTATTT--CACTC--ACA-TGAG--CTCATTT---ATTTATATCTATAT- 1172
consensus_9824#1 ATTATAATGAATTACTT 1001
consensus_9824#2 -----------------
consensus_9824#0 ATAAG------------ 1177
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||