|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 708 fasta sequence
[TGAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAGACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCGAAAGAGGGACTCAGGGAGAAGATGGACCACCAGGACCTCGAGGTGTTGAAGGAAGTCCTGGAGTACAGGGACCACTAGGACCAAAAGGTCAAGAAGGTCCTCGCGGTCCACAAGGAGTACCTGGTGATATAGGGACCCCAGGACCTGATGGACCAAAAGGAGAGTTGGGTCCTTTAGGAATACCTGGACCTCAAGGACCAACAGGACCTCCTGGACCAAAAGGTGTTCAAGGATCAGTTGGAGAGGATGGGCCTCCCGGACCACAAGGTCCTCTTGGAAAACAAGGTTTGAGAGGTCTACCTGGACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGNGCCTGTAGGATCCNCTGGACCCNCGGGATCTTTGGCAGTCCT]
[+] EMBL CD068908 [TGAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAGACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCG ]
[+] EMBL CD068899 [ GAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAGACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGC ]
[+] EMBL AI977355 [ TGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCGAAAGAGGGACTCAGGGAGAAGATGGACCACCAGGACCTCGAGGTGTTGAAGGAAGTCCTGGAGTACAGGGACCACTAGGACCAAAAGGTCAAGAAGGTCCTCGCGGTCCACAAGGAGTACCTGGTGATATAGGGACCCCAGGACCTGATGGACCAAAAGGAGAGTTGGGTCCTTTAGGAATACCTGGACCTCAAGGACCAACAGGACCTCCTGGACCAAAAGGTGTTCAAGGATCAGTTGGAGAGGATGGGCCTCCCGGACCACAAGGTCCTCTTGGAAAACAAGGTTTGAGAGGTCTACCTGGACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGNGCCTGTAGGATCCNCTGGACCCNCGGGATCTTTGGCAGTCCT]
consensusID : consensus_9856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 671 fasta sequence
[GACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATCAGCGAACAAGCATATGTACAAACTTCACCTGGTCGATGCCGTCAAGATTCAAATGATTTGGCAACATCATCAAATGTTGCAGAAAGAAATGTAGCTTATTCTGTTCCTCGTGGATTANATCTTTACATAGAAGGTCGGTCTTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTACCATTCGATTGGAATTTAATTTTGGAAAAAGAGTTTTTCACTCTATATGATCGACATGGACGAATGATTTTACGCATAATAATTGGCTCACATTTGCAATTAGAATATTTATCAAGAGAATCACAATCTAGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACACAGTCAGGAAAAACATTAGAGAAAGCTATTTTTAAAACTCGTCTAAATGATGGCCTATGGCATCGTGTGGCTGTCAGTATTGGTACTACTACCGCAAGATTACTGGTTGATCTGCACACAGAGAGAGTTCATAAATTATAATAATAAATAAGCAAGTATTG]
[+] EMBL CD144401 [GACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATCAGCGAACAAGCATATGTACAAACTTCACCTGGTCGATGCCGTCAAGATTCAAATGATTTGGCAACATCATCAAATGTTGCAGAAAGAAATGTAGCTTATTCTGTTCCTCGTGGATTANATCTTTACATAGAAGGTCGGTCTTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTACCATTCGATTGGAATTTAATTTTGGAAA ]
[+] EMBL CD144952 [ TAGCTTACTCTGTTCCTCGTGGATTAAATCTTTACATAGAAGGTCGGTCTTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTACCATTCGATTGGAA TTAAATTTGGAAAAAGAGTTTTTCACTCTATATGATCGACATGGACGAATGATTTTACGCATAATAATTGGCTCACATTTGCAATTAGAATATTTATCAAGAGAATCACAATCTAGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACACAGTCAGGAAAAACATTAGAGAAAGCTATTTTTAAAACTCGTCTAAATGATGGCCTATGGCATCGTGTGGCTGTCAGTATTGGTACTACTACCG ]
[-] EMBL CD060060 [ AATGATTTTAGGCATAATAATTGGCTCACATTTGCAATTAGAATATTTATCAAGAGAATCACTATCTAGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACGCAGTCAGTATAAACATTAGAGAAAGCTATTTTTAAAACTCGTCTAAATGATGGCATATGGCATCGTGTGACTGTCAGTATTGGTAATAGTACAGCAAGATTACTGGTTGATCTGCACACAGAGAGAGTTCATAAATTATAATAATAAATAAGCAAGTATTG]
consensusID : consensus_9856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 566 fasta sequence
[CTCGCAGGCCAAGATTCGTCACGAGGGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGGGCCTGTAGGATCCCCTGGACCCCCGGGATCTTTGGGCAGTCCTGGCCAGCAAGGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGATCAGAAGGACTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGAAAGGTAGCAAAGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTTGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGGACCAATCGGTCCTGAAGGTCCAGCTGGACATCCTGGTCCACCAGGATTACCTGGTGTTCCAGGTCAAAAGGGTTCATCTGGTCCAGCAGGACCACCCGGACCTCCGGGTCCAATCAAGGTCTTAGATATGAGTGAAGGTTATTATAGGTTTGAGGATACACCCAGAGTTAGA]
[+] EMBL CD078188 [CTCGCAGGCCAAGATTCGTCACGAGGGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGGGCCTGTAGGATCCCCTGGACCCCCGGGATCTTTGGGCAGTCCTGGCCAGCAAGGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGATCAGAAGGACTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGAAAGGTAGCAAAGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTTGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGG ]
[+] EMBL CD071708 [ TCCCCTGGACCCCCGGGATCTTTGGGCAGTCCTGGCCAGCAAGGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGATCAGAAGGACTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGA ]
[+] EMBL SMT14493 [ gaAAGGNCTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGAAAGGTAGCAAAGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTTGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGGACCAATCGGTCCTGAAGGTCCAGCTGGACATCCTGGTCCACCAGGATTACCTGGTGTTCCAGGTCAAAAGGGTTCATCTGG ]
[-] EMBL CD072015 [ CTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTAGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGGACCAATCGGTCATGAAGGCCCAGCTGGACATCCAGGTCCACCAGGATTACCTGGTGTTCCAGGTCAAAAGGGTTCATCTGGTCCAGCAGGACCACCCGGACCTCCGGGTCCAATCAAGGTCTTAGATATGAGTGAAGGTTATTATAGGTTTGAGGATACACCCAGAGTTAGA]
consensusID : consensus_9856#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[TAAATCTCGAGGATGCACATCAAAAAGCTGACTAGATTGTGATTCTCTTGATAAATATTCTAATTGCAAATGTGAGCCAATTATTATGCGTAAAATCATTCGTCCATGTCGATCATATAGAGTGAAAAACTCTTTTTCCAAATTTAATTCCAATCGAATGGTAAATAAAATAGACAGATCTGGAGGAAATGAATCAGGGATTAAGGACCGACCTTCTATGTAAAGATTTAATCCACGAGGAACAGAATAAGCTACATTTCTTTCTGCAACATTTGATGATGTTGCCAAATCATTTGAATCTTGACGGCATCGACCAGGTGAAGTTTGTACATATGCTTGTTCGCTGATTCTTACTGCCGTTAATACGTCTAATGTACCCTGAGGTGCTGTTTGTAATCTCTCTAAAAAGCCATTGACAGGAGTGTTAGATAGTAGAATAATCCACACAAAACTAGTTAAATATACTTGAAATTGATTGTTCATAGTCCAATGATACAGATACATATTA]
[+] EMBL CD133048 [TAAATCTCGAGGATGCACATCAAAAAGCTGACTAGATTGTGATTCTCTTGATAAATATTCTAATTGCAAATGTGAGCCAATTATTATGCGTAAAATCATTCGTCCATGTCGATCATATAGAGTGAAAAACTCTTTTTCCAAATTTAATTCCAATCGAATGGTAAATAAAATAGACAGATCTGGAGGAAATGAATCAGGGATTAAGGACCGACCTTCTATGTAAAGATTTAATCCACGAGGAACAGAATAAGCTACATTTCTTTCTGCAACATTTGATGATGTTGCCAAATCATTTGAATCTTGACGGCATCGACCAGGTGAAGTTTGTACATATGCTTGTTCGCTGATTCTTACTGCCGTTAATACGTCTAATGTACCCTGAGGTGCTGTTTGTAATCTCTCTAAAAAGCCATTGACAGGAGTGTTAGATAGTAGAATAATCCACACAAAACTAGTTAAATATACTTGAAATTGATTGTTCATAGTCCAATGATACAGATACATATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9856#0 -TGAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCAC 59
consensus_9856#1 GACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTC 60
consensus_9856#2 ---------------------------------------------------------CTC 3
consensus_9856#3 ------------------------------------------------------------
consensus_9856#0 CAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAG 119
consensus_9856#1 AGGGTCCCAAAGGTATGAAAGGCGAAACAGGATCTAGAGGATTGCCAGGAGCACCAGGTG 120
consensus_9856#2 GCAGGCCAAGATTCGTCACGAGGGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGAC 63
consensus_9856#3 -------------------------------------------------TAAATCTCGAG 11
* *
consensus_9856#0 ACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTG 179
consensus_9856#1 CACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATCAGCGAACAAGCATATGTACAAA 180
consensus_9856#2 GCACTGGGCCTGTAGGATCCCCTGGACC-CCCGGGATCTTTGGGCAGTCCTGGCCAGCAA 122
consensus_9856#3 GATGCACATCAAAAAGC-TGACTAGATTGTGATTCTCTTGATAAATATTCTAATTGCAAA 70
* * *
consensus_9856#0 GCCCGGCTGGCCAACCTGG--AAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCGA 237
consensus_9856#1 CTTCACCTGGTCGATGCCGTCAAGATTCAAATGATTTGGCAACATCA--TCAAATGTTGC 238
consensus_9856#2 GGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGA-TCAGAAGGACT 181
consensus_9856#3 TGTGAGCCAATTATTAT------GCGTAAAATCATTCGTCCATGTCGA-TCATATAGAGT 123
* * * * *
consensus_9856#0 AAGAGGGACTCAGGGAGAAGATGGACCACCAGGACC---TCGAGGTGTTGAAGGAAGTCC 294
consensus_9856#1 AGAAAGAAATGTAGCTTATTCTGTTCCTCGTGGATTANATCTTTACATAGAAGGTCGGTC 298
consensus_9856#2 GCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGA---CCGTGGTCCGAAAGGTAGCAA 238
consensus_9856#3 GAAAAACTCTTTTTCCAAATTTAATTCCAATCGAAT---GGTAAATAAAATAGACAGATC 180
* * * ** *
consensus_9856#0 TGGAGTACAGGGACCACTAGGACCAAAAG-GTCAAGAAGGTCCTCG--CGGTCCACAAGG 351
consensus_9856#1 TTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTAC---CATTCGATTGGA 355
consensus_9856#2 AGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAA---GGGTGAACAAGG 295
consensus_9856#3 TGGAGGAAATGAATCAGGGATTAAGGACCGACCTTCTATGTAAAGATTTAATCCACGAGG 240
* * ** * * * *
consensus_9856#0 AGTACCTGGTGATATAGGGACCCCAGGACCTG-ATGGACCAAAAGGAGAGTTGGGTCCTT 410
consensus_9856#1 ATTTAATTTTGGAAAAAGAGTTTTTCACTCTATATGATCGACATGGACGAATGATTTTAC 415
consensus_9856#2 TGTTCCTGGACTTGAGGGCGCACGAGG-TGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTG 354
consensus_9856#3 AACAGAATAAGCTACAT-TTCTTTCTGCAACATTTGAT-GATGTTGCCAAATCATTTGAA 298
* * *
consensus_9856#0 TAGGAATACCTGGACCTCAAGGACCAACAGGACCTCCTGG-ACCAAAAGGTGTTCAAG-- 467
consensus_9856#1 GCATAATAATTGGCTCACATTTGCAATTAGAATATTT----ATCAAGAGAATCACAATCT 471
consensus_9856#2 TCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGG-ACCAATCGGTCCTGAAG-- 411
consensus_9856#3 TCTTGACGGC-ATCGACCAGGTGAAGTTTGTACATATGCTTGTTCGCTGATTCTTACTGC 357
* * * *
consensus_9856#0 GATCAGTTGGAGAGGATGGGCCTCCCGGACCACAAGGTCCTCTTGGAAAACAAGGTTTGA 527
consensus_9856#1 AGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACACAGTCAGGAAA-AACATTAGA 530
consensus_9856#2 GTCCAGCTGGACATCCTGGTCCACCAGGATTACCTGGTGTTCC---------AGGTCAAA 462
consensus_9856#3 CGTTAATACGTCTA-ATGTACCCTGAGGTGCTGTTTGTAATCTCTCTAAA--AAGCCATT 414
* ** * * *
consensus_9856#0 GAGGTCTACCTGGACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAG-GA 586
consensus_9856#1 GAAAGCTATTTTTAAAACTCGTCTAAATGATGGCCTATGGCATCGTGTGGCTGTCAG-TA 589
consensus_9856#2 AGGGTTCATCTGGTCCAGCAGGACCACCCGGACCTCCGGGTCCAATCAAGGTCTTAGATA 522
consensus_9856#3 GACAGGAGTGTTAGATAGTAGAATAATCCA---CACAAAACTAGTTAAATATACTTGAAA 471
* * * * * *
consensus_9856#0 C--GTACTGG--ACCTCAGGGTCCCAAAGGTATGAA-AGGCGAAACAGGTGAACAAGGAG 641
consensus_9856#1 TTGGTACTACT-ACCGCAAGATTACTGGTTGATCTGCACACAGAGAGAGTTCATAAATTA 648
consensus_9856#2 TGAGTGAAGGTTATTATAGGTTTGAGGATACACCCAGAGTTAGA---------------- 566
consensus_9856#3 TTGATTGTTCATAGTCCAATGATACAGATACATATTA----------------------- 508
* * * *
consensus_9856#0 TACCTGGTGAACCAGGACGCACTGNGCCTGTAGGATCCNCTGGACCCNCGGGATCTTTGG 701
consensus_9856#1 TAA-TAATAAATAAGCAAGTATTG------------------------------------ 671
consensus_9856#2 ------------------------------------------------------------
consensus_9856#3 ------------------------------------------------------------
consensus_9856#0 CAGTCCT 708
consensus_9856#1 -------
consensus_9856#2 -------
consensus_9856#3 -------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||