cluster # 9869

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Schistosoma mansoni
cluster # 9869 cluster # 9869 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9869#0 length = 549 sequences # 9

consensus_9869#1 length = 517 sequences # 2
consensus_9869#2 length = 364 sequences # 1

consensusID : consensus_9869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 549
fasta sequence

                              [AATAAGCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT-CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA-GT-TGTGTTCC-TTGAATTA-GGACAAGGACTA]

[-] EMBL CD146458             [AATAAGCACTGATCTACTTCTTGTGGATCTTCATCCAGTACTTCTTCGCTAATTTGATAACTAGACGATTCATTTTCACCAATCATCATGTGCATG TACAATCTAAATGAGCTCTGAGTTGTTCAGCTATATCCATGGCAAGTTTTAATTCTATAAACAATATACTCCGGCTCTATGAAGTAGAATCATTCTGAGCTTCTTTAGAACAACATGAGAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTATGGAAATGAGTTTATATAACTTGTCCGAAAACTCAACCGCAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCGAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTCTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTA GGACAAGG    ]
[+] EMBL CD146526             [     GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTTGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGGATTA GGACANGGACTA]
[+] EMBL CD146513             [     GCACTGATCTTCTTCTTGTGGATCTTCATCCGGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCGCCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAACTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGNGAATTTCTGAAGTTTGGAAAATCCANAGGAGCTGTCTNTACACTTGATTTAATGGTNCGG TCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGGTCCTTTGAATTA GGACCAG     ]
[+] EMBL CD146528             [     GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTANNGACAg      ]
[+] EMBL CD146553             [     GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTTGATTANNGACAg      ]
[+] EMBL CD146552             [     GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAACTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GTNTGTG TCC TTGAATTA NGACAng     ]
[+] EMBL CD146520             [     GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGG ATTAACAGAATGATCATGANGTAAATGTTCTTCTTGTTCANGT TGTG TCC TTGAATTA GGACAng     ]
[-] EMBL CD146438             [      CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTANATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTA GGACAAGG    ]
[+] EMBL CD161452             [                                                                                                 TACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCAAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTA GGACAAG     ]




>consensus_9869#0
AATAAGCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAA
CTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGT
TGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAA
TTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGT
GCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACA
ATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCG
TCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTT
GGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGAA
TTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGGA
CAAGGACTA

consensusID : consensus_9869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 517
fasta sequence

                              [CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGANAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTNTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGAGCTATCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGGACAAGG]

[-] EMBL CD146430             [CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGANAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTNTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGAGCTATCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGGACAAGG]
[-] EMBL CD161495             [                                                                                                                                                                                                                                                                                                                                                                   ATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGGACAAGG]




>consensus_9869#1
CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGANAACTAGAA
GATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTNTGAGTTGTTCA
GCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAA
TCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCT
TGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTG
CTGAGCTATCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCG
GTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACAC
TTGATTTAATGGTCGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTT
CTTCTTGTTCAGTTGTGTTCCTTGAATTAGGACAAGG

consensusID : consensus_9869#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [TGATGATTGGTGAAAATGAATCTGCTAGTNANCANATTGGCGGAGAAGTACTGGATGAAGATCCACAAGAAGAAGATCAGCGCTTATTAATGTGACGGGAGAGAGANTTCTCTAACCTATTTTTATGTNGTTTGCTGANANCTCCCAATGTGTACACTAAAAAAANGCTNGATANTCTATCAAGNGATCGTGATATCGNGTATGTNTATTAGCNGANCATNTATCTCATTTCCTCCNGNCTTNTATGTTNACTGTCCATNTTACATNTANTCGCTAGCTCCTATTCTGGCTGANCGTTCGCGATNCTTACAAACACTTCATACATNGATCATCTTATCTTTTNNTCGAAAACACGTCCTNCCCA]

[+] EMBL SM793                [TGATGATTGGTGAAAATGAATCTGCTAGTNANCANATTGGCGGAGAAGTACTGGATGAAGATCCACAAGAAGAAGATCAGCGCTTATTAATGTGACGGGAGAGAGANTTCTCTAACCTATTTTTATGTNGTTTGCTGANANCTCCCAATGTGTACACTAAAAAAANGCTNGATANTCTATCAAGNGATCGTGATATCGNGTATGTNTATTAGCNGANCATNTATCTCATTTCCTCCNGNCTTNTATGTTNACTGTCCATNTTACATNTANTCGCTAGCTCCTATTCTGGCTGANCGTTCGCGATNCTTACAAACACTTCATACATNGATCATCTTATCTTTTNNTCGAAAACACGTCCTNCCCA]




>consensus_9869#2
TGATGATTGGTGAAAATGAATCTGCTAGTNANCANATTGGCGGAGAAGTACTGGATGAAG
ATCCACAAGAAGAAGATCAGCGCTTATTAATGTGACGGGAGAGAGANTTCTCTAACCTAT
TTTTATGTNGTTTGCTGANANCTCCCAATGTGTACACTAAAAAAANGCTNGATANTCTAT
CAAGNGATCGTGATATCGNGTATGTNTATTAGCNGANCATNTATCTCATTTCCTCCNGNC
TTNTATGTTNACTGTCCATNTTACATNTANTCGCTAGCTCCTATTCTGGCTGANCGTTCG
CGATNCTTACAAACACTTCATACATNGATCATCTTATCTTTTNNTCGAAAACACGTCCTN
CCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9869#0      AATAAGCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAA 60
consensus_9869#1      ------CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGANAA 54
consensus_9869#2      ------------------------------------------------------------
                                                                                  

consensus_9869#0      CTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGT 120
consensus_9869#1      CTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTNTGAGT 114
consensus_9869#2      ------------------------------------------------------------
                                                                                  

consensus_9869#0      TGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAA 180
consensus_9869#1      TGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAA 174
consensus_9869#2      ---------TGATGATTGGTGAAAATGAATCTGCTAGTNANCANATT--GGC-----GGA 44
                               * **   ***  * * * ***    **   *  * * *  ***     * *

consensus_9869#0      TTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGT 240
consensus_9869#1      TTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGT 234
consensus_9869#2      GAAGTACTGGATGAAGATCCACAAGAAGAAGATCAGCGCTTATTAATGTGACGGGAGAGA 104
                        ** *        ** * *     ** ** ** *    *  **          *  ** 

consensus_9869#0      GCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACA 300
consensus_9869#1      GCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACA 294
consensus_9869#2      GANTTCTCTAACCTATTTTT--ATGTNGTTTGCTGANANCT-CCCAATGTGTACACTAAA 161
                      *  *  * *** * ** ***  *  *   **  * * *  *  ****    *  ** * *

consensus_9869#0      ATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCG 360
consensus_9869#1      ATATTGCTGAG----------------------CTATCATCAAATTTCTCAGTTAGACCG 332
consensus_9869#2      AAAANGCTNGAT---------------------ANTCTATCAAGNGATC--GTGATATCG 198
                      * *  ***                              *****        ** * * **

consensus_9869#0      TCTAC-CATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTT 419
consensus_9869#1      TCTAC-CATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTT 391
consensus_9869#2      NGTATGTNTATTAGCNGANCATNTATCTCATTTC--CTCCNGNCTTNTATGTTNACTGTC 256
                        **    ***     **      **    *      **         ** *     ** 

consensus_9869#0      TGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGA 479
consensus_9869#1      TGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGA 451
consensus_9869#2      CATNTTACATNTANTCGCTAGCTCCTATTCTGGCTGANCGTTCGCGATNCTTACA-AACA 315
                            *     *   ***  **       **  * *  * ***      **    *  *

consensus_9869#0      ATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGG 539
consensus_9869#1      ATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGG 511
consensus_9869#2      CTTCATACATNGATCAT----CTTATCTTTTNNTCGAAAACACGTCCTNCCCA------- 364
                       ** * * *  ******       ** ** *  * *   *   **  * *          

consensus_9869#0      ACAAGGACTA 549
consensus_9869#1      ACAAGG---- 517
consensus_9869#2      ----------