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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1026 fasta sequence
[GGCGCGTGAACGTTTCATGGGTCGAAAGCTGACAGTAGTCCCTCTAAGGACTTGGTTAGTATATTGGCTTTCCTTCAACGCTGGGAGTGTTGTACTGTAGAAATGACGGATGTAGTAGAAGCTCGAAGATGTCTTGGGTGTCGTGTTACATTCGAGACAGATGACGAATTTTGGCATCATATATTAAATGTGGATTGTAGTAGTTCGATAAGCTCACCGAGTTTGAGTAAAGATGTATCTTTACCTTG-TTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTTCATCTGAT-AAAATACCAGTAATGTCGNTCCTCAGTTTCGTACTGATGATGGGCACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAATACTATCCTTTTATTGGATGTAAACGGGGATTCATCGCACACTTAAAAGCATTTGTACCATTCCCATCAAATTTTTTTTAAAAAAAAAATTCCTTTATTTCCCAACATTTGTACCAAAATCCCCCTTACTTCCAATTTTACCATTTTTTTTTCAAAAAAACCAAAACTAANTCTTGAGTTTCTTCGGGCATTCAAAACNTATCATTATTTTTAAAACCCTTCTTGAAATTTTTCCTTTAACTTGTTTCA]
[+] EMBL CD080125 [GGCGCGTGAACGTTTCATGGGTCGAAAGCTGACAGTAGTCCCTCTAAGGACTTGGTTAGTATATTGGCTTTCCTTCAACGCTGGGAGTGTTGTACTGTAGAAATGACGGATGTAGTAGAAGCTCGAAGATGTCTTGGGTGTCGTGTTACATTCGAGACAGATGACGAATTTTGGCATCATATATTAAATGTGGATTGTAGTAGTTCGATAAGCTCACCGAGTTTGAGTAAAGATGTATCTTTACCTTG TTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTANANAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTTCATCTGAT AAAATACCAGTAATGTCGNTCCTCAGTTTCGTACTGATGATGGGCACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAATACTATCCTTTTATTGGATGTAAACGGGGATTCATCGCACACTTAAAAGCATTTGTACCATTCCCATCAAATTTTTTTTAAAAAAAAAATTCCTTTATTTCCCAACATTTGTACCAAAATCCCCCTTACTTCCAATTTTACCATTTTTTTTTCAAAAAAACCAAAACTAANTCTTGAGTTTCTTCGGGCATTCAAAACNTATCATTATTTTTAAAACCCTTCTTGAAATTTTTCCTTTAACTTGTTTCA]
[+] EMBL CD084215 [ gagGAGTTTGAGTAAAGATGTATCTTTACCTTGTTTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTCATCAAGAAGTTTTAG ]
[+] EMBL CD181124 [ GACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGT ]
[+] EMBL CD083567 [ AAAAGTACGGCAACAGATGATTTG GTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCAC TCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACT ]
consensusID : consensus_9874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 869 fasta sequence
[CTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG-AAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCAG-ACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGTGTCAATTTCAGTACAATCGTTTATCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGAAATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATTTTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGCTACTAATTATTTATTTCCATT]
[+] EMBL CD084304 [CTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAAT ]
[+] EMBL CD187702 [ CACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTCGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACCGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAACACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAGATACTATCACTTTTATCGAGTGTAAACGGTGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAGAAGAGAAAGATCTACTTTGATTGACGAGAACAGTATGTAAAGAAAGAATTACGCGCTATACTTCCACAGTCTTTACAACATG ]
[+] EMBL CD187721 [ CACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAACACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGNGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTT ]
[+] EMBL CD179562 [ ATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAATACCACCCATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCCACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG AAGAATTACGCGCTATACTTCCTCAGCCTTTACAACATGTTATTTCTTCTCAG ACAA ]
[+] EMBL CD089996 [ GTTCCGACAATTCTCACTCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG AAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCAG ACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGTGTCAATTTCAGTACAATCGTTTATCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGAAATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATTTTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGCTACTAATTATTTATTTCCAT ]
[-] EMBL CD089952 [ TTCCGACAATTTTCACTCATGTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTAATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTNTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACTCGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG AAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCAG ACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGTGTCAATTTCAGTACAATCGTTTATCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGAAATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATTTTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGCTACTAATTATTTATTTCCATT]
[+] EMBL AI395859 [ CTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATA ]
[+] EMBL AI395866 [ GTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAG AAGATCTACTTGAATTGACGAGAACAGTATGTAAAG ATGAATTACGCGCTATACTTCCACAGTCTTTACAACATGTTATTTCTCCTCAGCAC AAAAACGCCAATGACTAAAGTTGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9874#0 GGCGCGTGAACGTTTCATGGGTCGAAAGCTGACAGTAGTCCCTCTAAGGACTTGGTTAGT 60
consensus_9874#1 ------------------------------------------------------------
consensus_9874#0 ATATTGGCTTTCCTTCAACGCTGGGAGTGTTGTACTGTAGAAATGACGGATGTAGTAGAA 120
consensus_9874#1 ------------------------------------------------------------
consensus_9874#0 GCTCGAAGATGTCTTGGGTGTCGTGTTACATTCGAGACAGATGACGAATTTTGGCATCAT 180
consensus_9874#1 ------------------------------------------------------------
consensus_9874#0 ATATTAAATGTGGATTGTAGTAGTTCGATAAGCTCACCGAGTTTGAGTAAAGATGTATCT 240
consensus_9874#1 ------------------------------------------------------------
consensus_9874#0 TTACCTTGTTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTG 300
consensus_9874#1 ------------------------------------------------------------
consensus_9874#0 TGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTT 360
consensus_9874#1 ------------------------------------------------CTCGAACATTTT 12
************
consensus_9874#0 TCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGAT 420
consensus_9874#1 TCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGAT 72
************************************************************
consensus_9874#0 GTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAAT 480
consensus_9874#1 GTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAAT 132
************************************************************
consensus_9874#0 TTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGT 540
consensus_9874#1 TTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGT 192
************************************************************
consensus_9874#0 GGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGG 600
consensus_9874#1 GGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGG 252
************************************************************
consensus_9874#0 CCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCT 660
consensus_9874#1 CCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCT 312
************************************************************
consensus_9874#0 ATGAGTTCCGACAATTCTCACTTCATCTGATAAAA-TACCAGTAATGTCGNTCCTCAGTT 719
consensus_9874#1 ATGAGTTCCGACAATTCTCACT-CATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTT 371
********************** ************ ************** *********
consensus_9874#0 TCGTACTGATGATGGGCACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAA-T 778
consensus_9874#1 TCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAAT 431
*************** ***************************************** *
consensus_9874#0 ACTATC-CTTTTATTGGATGTAAACGGGGATTCATCG-CACACTTA-AAAGCATTTGTAC 835
consensus_9874#1 ACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAA 491
****** ********* ******************* ***** ** ****** *****
consensus_9874#0 CATTCCC--ATCAAATT-TTTTTTAAAAAAAAAA---TTCCTTTATTTCCCAACATTTGT 889
consensus_9874#1 CAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGT 551
** * * ***** * ** ******* * *** * *** * ** * * * **
consensus_9874#0 ACCAAAA---------TCCCCCTTACTTCCAA---TTTTACCA----TTTTTTTTTCAAA 933
consensus_9874#1 ATGTAAAGAAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCA 611
* *** * * ******** ***** * ** *** *** *
consensus_9874#0 AAAACCAAAACTAANT--CTTGAGTTTCTTCGGGCATTCAAAACNTATCATTATTTTTAA 991
consensus_9874#1 GACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGT-GTCAATTTCAG 670
* * *** ** * ** **** ** ** * ** * * * *** *
consensus_9874#0 AACCCTTCTTGAAATTTTTCCTTTAACTTGTTTCA------------------------- 1026
consensus_9874#1 TACAATCGTTTA--TCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGA 728
** * ** * * * *** ** * * *
consensus_9874#0 ------------------------------------------------------------
consensus_9874#1 AATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATT 788
consensus_9874#0 ------------------------------------------------------------
consensus_9874#1 TTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGC 848
consensus_9874#0 ---------------------
consensus_9874#1 TACTAATTATTTATTTCCATT 869
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||