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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1247 fasta sequence
[AAGCAGAGCATACATTGAAAGAGATGAAGGCGTTGGACAAAAACGATGAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATATTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTCATTCAGATAAACGCAAATTACTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTTCTGTCAATTGCATGAAAGACATCAAGTTCAATTATCCCTTTTTTGTTTTCGATGAAAAAATTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGCTTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACTGACTCAGAACAGGTGCACGATATTCAATGTGGTCTTTGGCAGATCCTTATCCACANTTTTCAATCAGCGATATGATCAAGTACCTGTCAACCGATTTTTCTG]
[-] EMBL CD113429 [AAGCAGAGCATACATTGAAAGAGATGAAGGCGTTGGACAAAAACGATGAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATATTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTCATTCAGATAAACGCAAA ]
[-] EMBL CD149696 [ GACAAAAACGATGAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTCCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAA ]
[+] EMBL CD186092 [ TGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATATTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTCATTCAGATAAACGCAAATTACTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTTCTGTCAATTGCATGAAAGACATCAAGTTCAATTATCCCTTTNTTGTTTTCGATGAA ]
[+] EMBL CD077730 [ cgaggTGTTTGTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAG ATCATTGTCTG ]
[+] EMBL CD077907 [ CTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTTCTGTCAATTGCATGAAGGACATCAAGTTCAATTATCCCTTTTTTGTTTTCGATGAAAAAATTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGCTTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGCATTCCTTTC ]
[+] EMBL CD154355 [ TTATCCCTTTTTTGTTTTCGATGAAAAAATTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGCTTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGANNAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACTGACTCAGAACAGGTGCACGATATTCAATGTGGTCTTTGGCAGATCCTTATCCACANTTTTCAATCAGCGATATGATCAAGTACCTGTCAACCGATTTTTCTG]
[+] EMBL CD132267 [ TGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACT ]
[-] EMBL CD186572 [ GATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACTGACTCAGAACAG ]
[-] EMBL CD132167 [ GATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGCTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAA ]
[-] EMBL CD138453 [ TCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACCTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAG ]
[-] EMBL CD138409 [ TCTAGTGATATAGGAATAGTTGTTATGNATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTCTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAG ]
consensusID : consensus_9922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence
[GAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGACATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAAGTATGCATGCCTAGTATTTCTCCTCGTTTTCTTCTTTATGGTCTTGTGAAGTAATTTTTGACATACATTTAACTTTCCTTAAACACTGCTTTTTATCAC]
[+] EMBL CD138092 [GAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGACATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAAGTATGCATGCCTAGTATTTCTCCTCGTTTTCTTCTTTATGGTCTTGTGAAGTAATTTTTGACATACATTTAACTTTCCTTAAACACTGCTTTTTATCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9922#0 AAGCAGAGCATACATTGAAAGAGATGAAGGCGTTGGACAAAAACGATGAACTAACTCCTC 60
consensus_9922#1 -----------------------------------------------GAACTAACTCCTC 13
*************
consensus_9922#0 TGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTG 120
consensus_9922#1 TGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGACATTTG 73
****************************************************** *****
consensus_9922#0 CTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGAT 180
consensus_9922#1 CTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGAT 133
************************************************************
consensus_9922#0 GTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTG 240
consensus_9922#1 GTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTG 193
************************************************************
consensus_9922#0 CAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTG 300
consensus_9922#1 CAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTG 253
************************************************************
consensus_9922#0 AACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATA 360
consensus_9922#1 AACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATA 313
************************************************************
consensus_9922#0 GCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACT 420
consensus_9922#1 GCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAAGTATGCATGCCTAGTATTTCTC 373
************************************** * * * **
consensus_9922#0 TAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATA 480
consensus_9922#1 CTCGTTTTCTTCT----TTATGGTCTTGTGAAGTAATT--------TTTGACATACA-TT 420
**** * * ** **** ** * * ** ***** * *** *
consensus_9922#0 TTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTC 540
consensus_9922#1 TAACTTTCCTTAAACACTGCTTTTTATCAC------------------------------ 450
* ** * ** ** * ****
consensus_9922#0 ATTCAGATAAACGCAAATTACTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTT 600
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 CTGTCAATTGCATGAAAGACATCAAGTTCAATTATCCCTTTTTTGTTTTCGATGAAAAAA 660
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 TTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGC 720
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 TTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTG 780
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 TTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTT 840
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 TTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCG 900
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 ATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAG 960
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 CATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAA 1020
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 GGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGAT 1080
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 GTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTT 1140
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 CTACTGACTCAGAACAGGTGCACGATATTCAATGTGGTCTTTGGCAGATCCTTATCCACA 1200
consensus_9922#1 ------------------------------------------------------------
consensus_9922#0 NTTTTCAATCAGCGATATGATCAAGTACCTGTCAACCGATTTTTCTG 1247
consensus_9922#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||