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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1238 fasta sequence
[CCATATAAATCAGAATTTTCAAATTCTCGACGTAATTGACCATTTTCTTGTTCTAAATCTTTTATACGTAATAGCATGCTTGCACGATTTGTAATCAAAGCATTCAGTTCAGATGAGAACTGAAAATTTTGGCATGAAAGTTCATCAATCCGTCCAATTAAGTCATTTGTAACTATTTTAAGTGCATTTTTTGTTTGAACTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCTCCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTT-CCGGTAAATCACCTTGCGATAATTCATCAAAACATGGTTCTGAAAGCGATGAATTATTG-AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAG-TATACGAA-TATTGGCATCGTAAGATGCAGCTTTTTCCTCGTGCTGTCTACGTTCCTCTTCCAGATCATCTTCCAAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCTGAAAGTAGTCTATGGTCATCACTTAGCACAAGTGACTTTAGATGGAGGTCAGAGTTTTCAGAGTGCAAGCTATCGAGGTTCTCTAGTGCACGGATGACCAACGGCATTAAATTGTGAAGGAAGCCATTCCCATATAATTTGATCAAAGACTCGAACTCCTTATATATATCATTTGCCAAGTCCTGAACGCTTTGAGATATTGGCTGAGACCCGTCATCAGTGCTGCTAATCGCGTCCTCGCGATCATCTGATGATCGAAGACGTCGATCAGCTTGGATATA]
[+] EMBL CD187523 [CCATATAAATCAGAATTTTCAAATTCTCGACGTAATTGACCATTTTCTTGTTCTAAATCTTTTATACGTAATAGCATGCTTGCACGATTTGTAATCAAAGCATTCAGTTCAGATGAGAACTGAAAATTTTGGCATGAAAGTTCATCAATCCGTCCAATTAAGTCATTTGTAACTATTTTAAGTGCATTTTTTGTTTGAACTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCTCCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGT ]
[-] EMBL CD167776 [ ATTTTAAGTGCATTTTTTGTTTGAACTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCTCCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGATTTTTTATATCGTGTCCATCGTCTT CCGGTAAATCACCTTGCGATAATTCATCAAAACATGGTTCTGAAAGCGATGAATTATTG AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACCCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAA ]
[-] EMBL CD163759 [ AATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTT CCGGTAAATCACCTTGCGATAATTCATCAAGACATGGTTC ]
[-] EMBL CD188115 [ TCGGTAAGATCACCATCTACCTNCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTTCCCGGTAAATCACCTTGCGATAATTCATCAANACATGGTTCTGAAAGCGATGAATTATTGAAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACCGGT ]
[+] EMBL CD151667 [ TAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTT CCGGTAAATCACCTTGCGATAATTCATCAAAACATGGTTCTGAAAGCGATGAATTATTG AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCT TTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGCTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACGCGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCA ]
[+] EMBL CD151686 [ TAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGTGTAGTCCATGAGCCATCATGACTTTTTATATCGTGTCCCTCGTCTT CCGGTGAATCACCTTGCGATAATTCATCAACACATGGTTCTGACCGCGATGAATTATTG AAAATTCTCCCGCCTCTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCT TTTCTGAATTCCGCCTATTGCCTAGT ]
[-] EMBL CD122554 [ CGATAATTCATCAAAACATGGTTCTGAAAGCGATGGATTATTG AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTGGGGGGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCCCCTCCTGTACTGTGGTTAGATGTTTGAGCAAAAAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACGGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAA ]
[+] EMBL CD068672 [ GATGAATTA TG AAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCAT ATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAG TATACGAA TATTGGCATCGTAAGAT ]
[+] EMBL CD137249 [ CGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAG TATACGAA TATTGGCATCGTAAGATGCAGCTTTTTCCTCGTGCTGTCTACGTTCCTCTTCCAGATCATCTTCCAAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCTGAAA ]
[-] EMBL CD098044 [ ACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCCTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAGTTATACGAATTATTGGCATCGTAAGATG ]
[+] EMBL CD161252 [ CTCTTCCAGATCATCTTCCAAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCTGAAAGTAGTCTATGGTCATCACTTAGCACAAGTGACTTTAGATGGAGGTCAGAGTTTTCAGAGTGCAAGCTATCGAGGTTCTCTAGTGCACGGATGACCAACGGCATTAAATTGTGAAGGAAGCCATTCCCATATAATTTGATCAAAGACTCGAACTCCTTATATATATCATTTGCCAAGTCCTGAACGCTTTGAGATATTGGCTGAGACCCGTCATCAGTGCTGCTAATCGCGTCCTCGCGATCATCTGATGATCGAAGACGTCGATCAGCTTGGATATA]
consensusID : consensus_9933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[ATTGGGAACTATTTTAAGTGCATTTCTTGGTTGAAACTAATTCCGGATTCTCTGTTATGAAATTTAGTATTTCTCTCCGCACGCCAGCAAACATCGTAACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTAATATCGTGTCACATCGTCTTCCGGTAAATCACCTGGCGATAATTCACTCAAAACATGGTTCTGAAAGCGATGAATTAGAGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTCCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTTTAAAGTTTCTGAATTCAGCATATTGCATAGTCGGTTTAACTGATCAACTCCTGTACTG]
[-] EMBL CD098266 [ATTGGGAACTATTTTAAGTGCATTTCTTGGTTGAAACTAATTCCGGATTCTCTGTTATGAAATTTAGTATTTCTCTCCGCACGCCAGCAAACATCGTAACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTAATATCGTGTCACATCGTCTTCCGGTAAATCACCTGGCGATAATTCACTCAAAACATGGTTCTGAAAGCGATGAATTAGAGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTCCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTTTAAAGTTTCTGAATTCAGCATATTGCATAGTCGGTTTAACTGATCAACTCCTGTACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9933#0 CCATATAAATCAGAATTTTCAAATTCTCGACGTAATTGACCATTTTCTTGTTCTAAATCT 60
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 TTTATACGTAATAGCATGCTTGCACGATTTGTAATCAAAGCATTCAGTTCAGATGAGAAC 120
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 TGAAAATTTTGGCATGAAAGTTCATCAATCCGTCCAATTAAGTCATTTGTAACTATTTTA 180
consensus_9933#1 --------------------------------------------ATTGGGAACTATTTTA 16
*** * **********
consensus_9933#0 AGTGCATTTTTTGTTTGAA-CTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCT 239
consensus_9933#1 AGTGCATTTCTTGGTTGAAACTAATTCCGGATTCTCTGTTATGAAATTTAGTATTTCTCT 76
********* *** ***** ******* ******** **** ****** **********
consensus_9933#0 CCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAA 299
consensus_9933#1 CCGCACGCCAGCA--------------------------------AACA----------- 93
************* ****
consensus_9933#0 CTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACT 359
consensus_9933#1 -TCGTAACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACT 152
**** ******************************************************
consensus_9933#0 TTTTATATCGTGTC-CATCGTCTTCCGGTAAATCACCTTGCGATAATTCA-TCAAAACAT 417
consensus_9933#1 TTTAATATCGTGTCACATCGTCTTCCGGTAAATCACCTGGCGATAATTCACTCAAAACAT 212
*** ********** *********************** *********** *********
consensus_9933#0 GGTTCTGAAAGCGATGAATTATTGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTT 477
consensus_9933#1 GGTTCTGAAAGCGATGAATTAGAGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTT 272
********************* *************************************
consensus_9933#0 TCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATA 537
consensus_9933#1 CCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTTTAAAGTTTCTGAATTCAGCATA 332
************************************ **********************
consensus_9933#0 TTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAAT 597
consensus_9933#1 TTGCATAGTCGGTTTAACTGATCAACTCCTGTACTG------------------------ 368
**** *******************************
consensus_9933#0 CCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCT 657
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 AATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGA 717
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 AGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCT 777
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 TCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAGTATACGAATATTG 837
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 GCATCGTAAGATGCAGCTTTTTCCTCGTGCTGTCTACGTTCCTCTTCCAGATCATCTTCC 897
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 AAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCT 957
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 GAAAGTAGTCTATGGTCATCACTTAGCACAAGTGACTTTAGATGGAGGTCAGAGTTTTCA 1017
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 GAGTGCAAGCTATCGAGGTTCTCTAGTGCACGGATGACCAACGGCATTAAATTGTGAAGG 1077
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 AAGCCATTCCCATATAATTTGATCAAAGACTCGAACTCCTTATATATATCATTTGCCAAG 1137
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 TCCTGAACGCTTTGAGATATTGGCTGAGACCCGTCATCAGTGCTGCTAATCGCGTCCTCG 1197
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 CGATCATCTGATGATCGAAGACGTCGATCAGCTTGGATATA 1238
consensus_9933#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||