cluster # 994

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Schistosoma mansoni
cluster # 994 cluster # 994 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_994#0 length = 407 sequences # 1

consensus_994#1 length = 226 sequences # 1

consensusID : consensus_994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [GGCGGTTCBCGGCTGTVCAGCATTCTTATTCTCACTAAAACTCAACTACTCCTCCCTCAACACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAAATTGTCAATAGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCTACTCATTCGTTCATTACAGGACAACTGTACACAATAGCTAAMCGTCCACACGACACAACCACACAACCACYAAGCAAGTCGGCAAACAATCACATCCAAAATCAAACAACTATCCGACGAAAAGTATCMCCMATCCACAACMCCTACATMCTCMMMAAACCTATTCAATTCGTTCAACCAAACTATWATTCGMCMMATCSGTCAADTCGVATCGGTMAATCCCTTHAAAACMAHAA]

[+] EMBL BE519404             [GGCGGTTCBCGGCTGTVCAGCATTCTTATTCTCACTAAAACTCAACTACTCCTCCCTCAACACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAAATTGTCAATAGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCTACTCATTCGTTCATTACAGGACAACTGTACACAATAGCTAAMCGTCCACACGACACAACCACACAACCACYAAGCAAGTCGGCAAACAATCACATCCAAAATCAAACAACTATCCGACGAAAAGTATCMCCMATCCACAACMCCTACATMCTCMMMAAACCTATTCAATTCGTTCAACCAAACTATWATTCGMCMMATCSGTCAADTCGVATCGGTMAATCCCTTHAAAACMAHAA]




>consensus_994#0
GGCGGTTCBCGGCTGTVCAGCATTCTTATTCTCACTAAAACTCAACTACTCCTCCCTCAA
CACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAAATTGTCAAT
AGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCTACTCATTCG
TTCATTACAGGACAACTGTACACAATAGCTAAMCGTCCACACGACACAACCACACAACCA
CYAAGCAAGTCGGCAAACAATCACATCCAAAATCAAACAACTATCCGACGAAAAGTATCM
CCMATCCACAACMCCTACATMCTCMMMAAACCTATTCAATTCGTTCAACCAAACTATWAT
TCGMCMMATCSGTCAADTCGVATCGGTMAATCCCTTHAAAACMAHAA

consensusID : consensus_994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [GCCACGAGCTCGCCTCGACCCGACCACACATCCTTATTCTCACTAAAACTCAACTACTCCTCCCTCAAACACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAAATTGTCAATAGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCTACTCATTCGTTCATTACAGGACAACTGTACACAATAGCTAACCGTC]

[-] EMBL CD159291             [GCCACGAGCTCGCCTCGACCCGACCACACATCCTTATTCTCACTAAAACTCAACTACTCCTCCCTCAAACACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAAATTGTCAATAGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCTACTCATTCGTTCATTACAGGACAACTGTACACAATAGCTAACCGTC]




>consensus_994#1
GCCACGAGCTCGCCTCGACCCGACCACACATCCTTATTCTCACTAAAACTCAACTACTCC
TCCCTCAAACACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAA
ATTGTCAATAGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCT
ACTCATTCGTTCATTACAGGACAACTGTACACAATAGCTAACCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_994#0      ------GGCGGTTCBCGGCT-GTVCA-GCATTCTTATTCTCACTAAAACTCAACTACTCC 52
consensus_994#1      GCCACGAGCTCGCCTCGACCCGACCACACATCCTTATTCTCACTAAAACTCAACTACTCC 60
                            **    * ** *  *  **  *** ****************************

consensus_994#0      TCCCTCAA-CACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAA 111
consensus_994#1      TCCCTCAAACACATCATCCTCTAATCGTTGTCTCTTCGTCCACTCACAATCCGCTTACAA 120
                     ******** ***************************************************

consensus_994#0      ATTGTCAATAGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCT 171
consensus_994#1      ATTGTCAATAGGCGAACGAGTATCAACACAATACACACATCACAATCAGTAAGCGCATCT 180
                     ************************************************************

consensus_994#0      ACTCATTCGTTCATTACAGGACAACTGTACACAATAGCTAAMCGTCCACACGACACAACC 231
consensus_994#1      ACTCATTCGTTCATTACAGGACAACTGTACACAATAGCTAACCGTC-------------- 226
                     ***************************************** ****              

consensus_994#0      ACACAACCACYAAGCAAGTCGGCAAACAATCACATCCAAAATCAAACAACTATCCGACGA 291
consensus_994#1      ------------------------------------------------------------
                                                                                 

consensus_994#0      AAAGTATCMCCMATCCACAACMCCTACATMCTCMMMAAACCTATTCAATTCGTTCAACCA 351
consensus_994#1      ------------------------------------------------------------
                                                                                 

consensus_994#0      AACTATWATTCGMCMMATCSGTCAADTCGVATCGGTMAATCCCTTHAAAACMAHAA 407
consensus_994#1      --------------------------------------------------------