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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1387 fasta sequence
[GCCTTGGATTAGATGAAACTGGCACTGCTCTGTCAAATGCATGTGGACTTGTTGGTCAAGAGTGCGCACGTGAAGCCGCTGGTATTGTGGTAGAAATGATTAGATCAAAGAAAATGGCCGGACGTGCAGTTTTAATGGCAGGGCCCCCAGGGACTGGAAAGACTGCAATAGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTTCATCGAGCACTCGAATCAACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGGCACTGAAGACATTATTTCTCCTCATGGAATCCCATTAGATTTACTAGATCGTGTTATGATCATACGCACTCTTCCTTATTCTTGTGAAGAAGTAATCCAAATCCTACGTATACGTGCACAAACTGAAGGGATAAAAGTATCCGAACAAGCATTCACTTGCCTTGCAACTGTCTCTACAGATACAACTTTACGATATGCTGTCCAACTTTTGACCCCAGCGTGTCGTCTTGCCCAACTGAGTGGACGAGATGAAGNTGAACCTTCAGATATCGAAGAAGTAAGATCTCTATTTCTTAATGCAAAGCAATCTGCCAAAATACTCACTGAACATGAAAATCAGTTTATGCGCTGAATATACGTAATGTTGAAGCGTGTGCATAATTTTGTAAACTAAAATATATGATTATTCACTNTTAAAAAAAAANAAAAAAAAAA]
[-] EMBL CD116545 [GCCTTGGATTAGATGAAACTGGCACTGCTCTGTCAAATGCATGTGGACTTGTTGGTCAAGAGTGCGCACGTGAAGCCGCTGGTATTGTGGTAGAAATGATTAGATCAAAGAAAATGGCCGGACGTGCAGTTTTAATGGCAGGGCCCCCAGGGACTGGAAAGACTGCAATGGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAA ]
[-] EMBL CD068841 [ ACTGCAATAGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACA ]
[+] EMBL CD184165 [ CAATAGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGGAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCC ]
[+] EMBL CD189362 [ CCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGTGTTTGGTTTACGCATAAAGGAGATCAAAGAGGTCTATGAAGGACAAGTAACCGAGTTAACTCCGG ]
[+] EMBL CD082233 [ acgagacanAACTTCAGGAGAGCGATAGGTTTACGCATTTAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTTCATCGAGCACTCGAATCAACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGG ]
[+] EMBL CD083787 [ cgaggCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCCGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGT ]
[+] EMBL CD185600 [ AATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGC ]
[+] EMBL CD079181 [ GAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTTCATCGAGCACTCGAATCAACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGGCACTGAAGACATTATTTCTCCTCATGGAATCCCATTAGATTTACTAGATCGTGTTATGATCATACGCACTCTTCCTTATTCTTGTGAAGAAGTAATCCAAATCCTACGTATACGTGCACAAACTGAAGGGATAAAAGTATCCGAACAAGCATTCACTTGCCTTGCAACTGTCTCTACAGATACAACTTTACGATATGCTGTCCAACTTTTGACCCCAGCGTGTCGTCTTGCCCAACTGAGTGGACGAGATGAAGNTGAACCTTC ]
[-] EMBL AI395453 [ CAACTTTTGACCCCGGCGTGTCGTCTTGCCCAACTGAGTGGACGAGATGAAGTTGAACCTTCAGATATCGAAGAAGTAAGATCTCTATTTCTTAATGCAAAGCAATCTGCCAAAATACTCACTGAACATGAAAATCAGTTTATGCGCTGAATATACGTAATGTTGAAGCGTGTGCATAATTTTGTAAACTAAAATATATGATTATTCACTNTTAAAAAAAAANAAAAAAAAAA]
consensusID : consensus_9940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence
[CCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGTAATCACAGGTGTAGTTTTATACCTTAATGCCTCCTGGCTCTTCATGCTAGTTTGTTTTCATTATATTAGCGAGTCAAAGTCTAATATTGTTTTCATCACAACGAATATTCAGTTTCATTGTTTTTTGACTTGTGAAATATCGATAGCTTATTATTGACGGTTGAGTTGAAAATCGTAAGACTGCATCCATATCAAGTGTTTAACGAGAATATTTGACAGCATATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTTGGGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGAACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGTTCGAAACAGTGCTTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAATCAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTTTATTAACTAACAGGTATTTAACACAGTTAAGTACTTTCCCCAGACTCTCATCATCGTAAATTCTTTTGGTAAGTTGGTGTTTAAGATGGTTACCTGAGGTTCCCACACTTTTGTTCGGCTTTGAGAAAAAGGTCATAGTGATTTCACAGATAAATTCTATGTATTGAGTATCTACACAAGTTATTAATCCTTAATGATGAATATGTTCTTTTTTATATCCCAAAGCATAGAAAACTGCATTTCCGA]
[+] EMBL CD181505 [CCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGTAATCACAGGTGTAGTTTTATACCTTAATGCCTCCTGGCTCTTCATGCTAGTTTGTTTTCATTATATTAGCGAGTCAAAGTCTAATATTGTTTTCATCACAACGAATATTCAGTTTCATTGTTTTTTGACTTGTGAAATATCGATAGCTTATTATTGACGGTTGAGTTGAAAATCGTAAG ]
[+] EMBL CD117699 [ AATATTCAGTTTCATTGTTTTTTGACTTGTGAAATATCGATAGCTTATTATTGACGGTTGAGTTGAAAATCGTAAGACTGCATCCATATCAAGTGTTTAACGAGAATATTTGACAGCATATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTTGGGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGAACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGTTCGAAACAGTGCTTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAATCAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTTTATTAACTAACAGGTATTTAACACAG ]
[-] EMBL CD116745 [ TTTGACAGCATATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTTGAGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGAACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGCTCGAAACAGTGCTTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAATCAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTTTATTAACTAACAGGTATTTAACACAGTTAAGTACTTTCCCCAGACTCTCATCATCGTAAATTCTTTTGGTAAGTTGGTGTTTAAGATGGTTACCTGAGGTTCCCACACTTTTGTTCGGCTTTGAGAAAAAGGTCATAGTGATTTCACAGATAAATTCTATGTATTGAGTATCTACACAAGTTATTAATCCTTAATGATGAATATGTTCTTTTTTATATCCCAAAGCATAGAAAACTGCATTTCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9940#0 GCCTTGGATTAGATGAAACTGGCACTGCTCTGTCAAATGCATGTGGACTTGTTGGTCAAG 60
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 AGTGCGCACGTGAAGCCGCTGGTATTGTGGTAGAAATGATTAGATCAAAGAAAATGGCCG 120
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 GACGTGCAGTTTTAATGGCAGGGCCCCCAGGGACTGGAAAGACTGCAATAGCTTTGGCCA 180
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 TTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACT 240
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 CCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTAC 300
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 GCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGA 360
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 CGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTA 420
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 CTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAG 480
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 AACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTC 540
consensus_9940#1 ------------------------------------------------------------
consensus_9940#0 AGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTC 600
consensus_9940#1 -------------------------------------------------------CCCTC 5
*****
consensus_9940#0 TCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATC 660
consensus_9940#1 TCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATC 65
************************************************************
consensus_9940#0 TGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGC 720
consensus_9940#1 TGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGC 125
************************************************************
consensus_9940#0 TCATGAAGCCAAAGAAGACGGAAATCACAGATA-AGCTAAGGAAGGAAAT-CAACAAGGT 778
consensus_9940#1 TCATGAAGCCAAAGAAGACGGTAATCACAGGTGTAGTTTTATACCTTAATGCCTCCTGGC 185
********************* ******** * ** * * *** * * **
consensus_9940#0 TGTTAATAAATACATAGAT-CAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTG 837
consensus_9940#1 TCTTCATGCTAGTTTGTTTTCATTATATTAGCGAGTCAAAGTCTAATATTGTTTTCATC- 244
* ** ** * * ** *** ** ** * * * ** **
consensus_9940#0 ATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTT-CATCGAGCACTCGA-ATC 895
consensus_9940#1 ACAACGAATATTCAGTTT-CATTGT-TTTTTGACTTGTGAAATATCGATAGCTTATTATT 302
* * * * ** * *** * * *** ** * * ***** ** **
consensus_9940#0 AACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGGCAC 955
consensus_9940#1 GACGGTTGAGTTGAAAATCGTAA--GACTGCATCCATATCAAGTGTTTAACGAGAATATT 360
** * * * * * * ** * ** *** * ***
consensus_9940#0 TGAAGACATTATTTCTCCTCATG-----GAATCCCATTAGATTTAC--TAGATCGTGTTA 1008
consensus_9940#1 TGACAGCAT-ATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTT 419
*** *** ** * * * * ** * ** **** ** * * *
consensus_9940#0 TGATCATACGCACTCTTCCTTATTCTTGTGAAGAAGTAATCCAAATCC-TACGTATACGT 1067
consensus_9940#1 GGGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGA 479
* * * *** * *** * ** ** * * ** * ** * ***
consensus_9940#0 GCACAAACTGAAGGGATAAAAGTATCCGAA--CAAGCATTCACTTGCCTTGCAACTGTCT 1125
consensus_9940#1 ACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGT-TCGAAACAGTGC 538
*** ** * **** ** * ** ** * * * * *** **
consensus_9940#0 CTACAGATA-CAACTTTACGATA----TGCTGTCCAACTTTTGACCCCAGC-GTGTCGTC 1179
consensus_9940#1 TTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAAT 598
**** ** * * ** * * * * * *** * ** * **
consensus_9940#0 TTGCCCAACTGAGT--GGACGAGATGAAGNTGAACCTTCAGATATCGAAGAAGTAAGATC 1237
consensus_9940#1 CAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTT 658
** ** * ** * *** ** ** * * ** * ** *
consensus_9940#0 TCT---------ATTTCTTAATGCA---AAGCAATCTGCCAAAATACTCACT---GAACA 1282
consensus_9940#1 TATTAACTAACAGGTATTTAACACAGTTAAGTACTTTCCCCAGACTCTCATCATCGTAAA 718
* * * **** ** *** * * * ** * * **** * * *
consensus_9940#0 T-------GAAAATCAGTTTATGCGCTGAATATACGTAATGTTGAAGCGTGTGCATAATT 1335
consensus_9940#1 TTCTTTTGGTAAGTTGGTGTTTAAGATGGTTACCTGAGGTTCCCACACTTTTGTTCGGCT 778
* * ** * ** * * * ** ** * * * * * ** *
consensus_9940#0 TTGTAAACTAAAATATA-TGATTATTCACTNTTAAAAAAAAANAAAAAAAAAA------- 1387
consensus_9940#1 TTGAGAAAAAGGTCATAGTGATT--TCACAGATAAATTCTATGTATTGAGTATCTACACA 836
*** ** * *** ***** **** **** * * * *
consensus_9940#0 ------------------------------------------------------------
consensus_9940#1 AGTTATTAATCCTTAATGATGAATATGTTCTTTTTTATATCCCAAAGCATAGAAAACTGC 896
consensus_9940#0 --------
consensus_9940#1 ATTTCCGA 904
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||