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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 921 fasta sequence
[TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG]
[+] EMBL CD188982 [TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC ]
[+] EMBL CD159226 [ GCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCANGATGAGTACGAACGTGTAGTTAAA ]
[+] EMBL CD152673 [ GCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATCTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCATAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATT ]
[+] EMBL BG930245 [ gTCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCC AAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAAT ACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCCCAatccat ]
[+] EMBL CD155343 [ TATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGA ]
[-] EMBL CD188748 [ GCANAATGTCAGGACGATCCTTNTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTA ]
[-] EMBL CD190059 [ TCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAAAGTGTAGTTAAATCACTCGTTAAAGGTACTCACGAGGAGGGTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTTTAAAACATTTTATCAATGTGATGATGTAGATGGACTATTTGATTATGATGATCATGGCGAATACT ]
[-] EMBL CD094292 [ GAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGT ]
[-] EMBL CD181318 [ ACGAGNAGGCTAACAAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAACGAATGTAGCCGTGTTACATCACCAA ]
[+] EMBL CD063134 [ CAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG]
consensusID : consensus_9992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[ATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGTTCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA]
[+] EMBL CD192878 [ATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGTTCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA]
consensusID : consensus_9992#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence
[TTTGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGTAAGTTACTCTTTTTTACGTATATTTTTAGGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC]
[+] EMBL CD190254 [TTTGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGTAAGTTACTCTTTTTTACGTATATTTTTAGGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9992#0 TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAA 60
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 AGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGAT 120
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 GGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGAC 180
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 TTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAG 240
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 TCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGA 300
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 AGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATC 360
consensus_9992#1 --------------------------------ATGACCCTCAGAGCGGTGAGCTGCCATC 28
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 TGAGAGATGGAATCCGACGCAAAATGTCAGG----------------------------- 391
consensus_9992#1 TGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGT 88
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 ------ACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCA-AACATCCATTCAGC 444
consensus_9992#1 TCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCA-AACATCCATTCAGC 147
consensus_9992#2 --------------TTTGAATTCGA---GCGTAGCTGATGGCCGATGGCATCTCGTAAAC 43
***** * * * ** *** * * **** * * *
consensus_9992#0 TGCACA-TGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGG 503
consensus_9992#1 TGCACA-TGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGG 206
consensus_9992#2 CTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAG 103
** * * ** ** * * * * ** ** * **** * * *
consensus_9992#0 ATGAGTA--CGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACA 561
consensus_9992#1 ATGAGTA--CGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACA 264
consensus_9992#2 TGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCA 163
*** ** *** * * * * ** ** ** ** * **
consensus_9992#0 AGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTC 621
consensus_9992#1 AGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTC 324
consensus_9992#2 TATTTGGACCACCAAT--GACTTTGTATGAAGGAGGTTATTTCAA-AGTAAGTTACTCTT 220
* * *** * ** *** * * * * * * *** * *
consensus_9992#0 TAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGA 681
consensus_9992#1 TAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGA 384
consensus_9992#2 T-------TTTACGTATATTTTTAGGCA---CGATTATGCTTCCCTGACGATTATC-CAT 269
* **** ** * * * * * ** *** *** *** ** *
consensus_9992#0 ATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGA 741
consensus_9992#1 ATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA------------------ 426
consensus_9992#2 ATAGTCCTCCTACAATGC------------------------------------------ 287
*** * ** ***
consensus_9992#0 AATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCC 801
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 ATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTC 861
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
consensus_9992#0 AAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG 921
consensus_9992#1 ------------------------------------------------------------
consensus_9992#2 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||