cluster # 9999

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Schistosoma mansoni
cluster # 9999 cluster # 9999 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9999#0 length = 652 sequences # 6

consensus_9999#1 length = 546 sequences # 6

consensusID : consensus_9999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 652
fasta sequence

                              [GAGCCATTAATTCGGCACGCAGGGCGGTAATCAACTGGTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACTCCTGGT]

[+] EMBL CD081794             [GAGCCATTAATTCGGCACGCAGGGCGGTAATCAACTGGTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACTCC    ]
[+] EMBL AA559416             [                      GGCGGTAATCAACT GTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTANACCATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCANAGACTTCATCTANAANACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACNATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGG                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD061017             [                                                                                                                                          GTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGTATGCAGAGACTTCATTTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCGTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATGTAGAGAAAAATACATAGAATTGTTCTGTTAAAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGCCCATTTTTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAG                           ]
[-] EMBL CD075525             [                                                                                                                                                                                                                                 GAAAACCCCGTTCCTCCCCCTGAAGTGGTAATTAACGGCCTTAAAGCTTGCAAACGCCTTAACGATATTGCCCTGGCCATAAGGTTTGTTGAATTTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATTAAACAAAAGATTGAACCCCCAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATTATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACCTTGTATAATTTAAAGAAAAATACATAAAATTGTTTTGTTAAAAGTATTAAACCTTTATCACACAAAACCGATGTGGTTGTGATTTGTTATTAATTTCAAAATGACCATTTTTAGCATTTTTGTCAACGGATAGTAAAAACTGAATGTTTTAGGTCCTACTGAACAAAAACACTCCTGGT]
[-] EMBL CD132781             [                                                                                                                                                                                                                                                                                                                       TGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACA        ]
[-] EMBL SMAA40610            [                                                                                                                                                                                                                                                                                                                                                                                                                GTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGGAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATNTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACT      ]




>consensus_9999#0
GAGCCATTAATTCGGCACGCAGGGCGGTAATCAACTGGTGTGAAAAGTTACCATAAAACT
GTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAAT
GCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAA
ATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCT
CCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTG
GCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAA
TGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAA
CTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATA
ATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAG
CCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAAC
GGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACTCCTGGT

consensusID : consensus_9999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 546
fasta sequence

                              [GGTGCGTGGTCGTTCGGCGGTAATCAACTGT-T-AAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGAT]

[+] EMBL CD084211             [    CGTGGTCGTTCGGCGGTAATCAACTGT T AAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGAT]
[+] EMBL AI975856             [ggtgatgatTCGTTCGGCGGTAATCAACTGTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACCATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATT                                                    ]
[+] EMBL CD138452             [                                                                                                                                                                                                                  TCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAA                                                                                                                                                                                                                                       ]
[-] EMBL CD138616             [                                                                                                                                                                                                                   CATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGAT                                                                                                                                                                                   ]
[-] EMBL CD138476             [                                                                                                                                                                                                                   CATCTAGAAGACGCCGTTCCTCCCCCTGGAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGAT                                                                                                                                                                                   ]
[-] EMBL CD138473             [                                                                                                                                                                                                                   CATCTAGAAGACGCCGTTCCTCCCCCTGAAATGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGAT                                                                                                                                                                                   ]




>consensus_9999#1
GGTGCGTGGTCGTTCGGCGGTAATCAACTGTTAAAAGTTACCATAAAACTGTCCCATATA
TTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGC
CATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTT
GGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAG
TGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGT
TTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAAC
AAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATG
ATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAA
AAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGT
TGTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9999#0      GAGCCATTAATTCG-GCACGCAGGGCGGTAATCAACTGGTGTGAAAAGTTACCATAAAAC 59
consensus_9999#1      --------GGTGCGTGGTCGTTCGGCGGTAATCAACTG---TTAAAAGTTACCATAAAAC 49
                                * ** *  **   ***************   * *****************

consensus_9999#0      TGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAA 119
consensus_9999#1      TGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAA 109
                      ************************************************************

consensus_9999#0      TGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAA 179
consensus_9999#1      TGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAA 169
                      ************************************************************

consensus_9999#0      AATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCC 239
consensus_9999#1      AATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCC 229
                      ************************************************************

consensus_9999#0      TCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCT 299
consensus_9999#1      TCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCT 289
                      ************************************************************

consensus_9999#0      GGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGA 359
consensus_9999#1      GGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGA 349
                      ************************************************************

consensus_9999#0      ATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGA 419
consensus_9999#1      ATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGA 409
                      ************************************************************

consensus_9999#0      ACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTAT 479
consensus_9999#1      ACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTAT 469
                      ************************************************************

consensus_9999#0      AATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATA 539
consensus_9999#1      AATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATA 529
                      ************************************************************

consensus_9999#0      GCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAA 599
consensus_9999#1      GCCGATGTGGTTGTGAT------------------------------------------- 546
                      *****************                                           

consensus_9999#0      CGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACTCCTGGT 652
consensus_9999#1      -----------------------------------------------------