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Anopheles gambiae
cluster # 103 cluster # 103       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_103#0 length = 658 sequences # 1  
consensus_103#1 length = 647 sequences # 1  

consensusID : consensus_103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence
                              [CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC]

[+] EMBL BM648526             [CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC]


>consensus_103#0 CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAAC GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG AAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAAT GTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCA GCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATC GTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAA GCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCT GGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCA GCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTC CCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGC ACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC



consensusID : consensus_103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence
                              [CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT]

[+] EMBL BM579121             [CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT]


>consensus_103#1 CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAA AAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAAC AAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGC ACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACC CTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAG TCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACC ACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTC GATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGC ATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGC CTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTT CTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_103#0      CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAAC 60
consensus_103#1      ---------------------------------CCGCCCA-CGCGTC-CGTACACAAAAC 25
                                                       **     ** *     **********

consensus_103#0      GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG 120
consensus_103#1      GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG 85
                     ************************************************************

consensus_103#0      AAG----GAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACG 176
consensus_103#1      AAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACG 145
                     ***    *************************************** *************

consensus_103#0      AAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTG 236
consensus_103#1      AAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTG 205
                     **************************************************** *******

consensus_103#0      AGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTT 296
consensus_103#1      AGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTT 265
                     ************************************************************

consensus_103#0      TATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCT 356
consensus_103#1      TATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCT 325
                     ************************************************************

consensus_103#0      CGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTA 416
consensus_103#1      CGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTA 385
                     ********************************** *************************

consensus_103#0      TGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCG 476
consensus_103#1      TGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTG 445
                     ************* ******************************************** *

consensus_103#0      ACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCA 536
consensus_103#1      ACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCA 505
                     ******************************************************* ****

consensus_103#0      CGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACC 596
consensus_103#1      CGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACC 565
                     ************************************************************

consensus_103#0      TGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGA 656
consensus_103#1      TGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGA 625
                     ************************************************************

consensus_103#0      TC-------------------- 658
consensus_103#1      TCCTGACCAAGAACGGCGAGCT 647
                     **                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)