These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC] [+] EMBL BM648526 [CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC] consensusID : consensus_103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT] [+] EMBL BM579121 [CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_103#0 CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAAC 60 consensus_103#1 ---------------------------------CCGCCCA-CGCGTC-CGTACACAAAAC 25 ** ** * ********** consensus_103#0 GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG 120 consensus_103#1 GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG 85 ************************************************************ consensus_103#0 AAG----GAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACG 176 consensus_103#1 AAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACG 145 *** *************************************** ************* consensus_103#0 AAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTG 236 consensus_103#1 AAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTG 205 **************************************************** ******* consensus_103#0 AGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTT 296 consensus_103#1 AGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTT 265 ************************************************************ consensus_103#0 TATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCT 356 consensus_103#1 TATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCT 325 ************************************************************ consensus_103#0 CGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTA 416 consensus_103#1 CGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTA 385 ********************************** ************************* consensus_103#0 TGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCG 476 consensus_103#1 TGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTG 445 ************* ******************************************** * consensus_103#0 ACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCA 536 consensus_103#1 ACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCA 505 ******************************************************* **** consensus_103#0 CGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACC 596 consensus_103#1 CGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACC 565 ************************************************************ consensus_103#0 TGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGA 656 consensus_103#1 TGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGA 625 ************************************************************ consensus_103#0 TC-------------------- 658 consensus_103#1 TCCTGACCAAGAACGGCGAGCT 647 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||