cluster # 1050

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1050 cluster # 1050 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1050#0 length = 688 sequences # 1

consensus_1050#1 length = 344 sequences # 1

consensusID : consensus_1050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CCGATCAGCTCGCAAGGCTGCAGAATCTGAAGGAATCGAACGCATAAGGCGCCGGTGAGAGGACGCGTAGAGTGGACGGTATCAGTGCGCGGGGAGGTATTGTGAGCAGGAGAGGGGACGAGCAGAAGACGGTAGGACACACACACACACACACAATTACACGAAGTAGTTAATTGTTTACCGATGCCGATGCACTGTACAACGGCACCGTTCAAAACCGTTCTGTGGACGTCAGTGGAGAGCCGCGGCCATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATTTTGTGCAAAACTCAATGGTGAATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTCCAAATGGGGTTTTTCGTTGTTGCTGTAAGTCATTGTCATTGTCATTATCGTTGTCGTGTCAGGTATACAGATGTTAGGAGAACGTCGTCCAACGGGATATTTAGTGTACTAATCAAGATCAAAGCTGCTAATGCATTTAGATCCCATACAAATAGCATCACGATTACCACTACTACTACCACTACTTTGCCGTCTGATAAGCGTCAGACGGATGGTTAGGCTTCCTTTGCGACGTGGACCGATGGGGGTTTGCCTTTGTGATAATAATGCATTTTTA]

[+] EMBL BM614784             [CCGATCAGCTCGCAAGGCTGCAGAATCTGAAGGAATCGAACGCATAAGGCGCCGGTGAGAGGACGCGTAGAGTGGACGGTATCAGTGCGCGGGGAGGTATTGTGAGCAGGAGAGGGGACGAGCAGAAGACGGTAGGACACACACACACACACACAATTACACGAAGTAGTTAATTGTTTACCGATGCCGATGCACTGTACAACGGCACCGTTCAAAACCGTTCTGTGGACGTCAGTGGAGAGCCGCGGCCATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATTTTGTGCAAAACTCAATGGTGAATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTCCAAATGGGGTTTTTCGTTGTTGCTGTAAGTCATTGTCATTGTCATTATCGTTGTCGTGTCAGGTATACAGATGTTAGGAGAACGTCGTCCAACGGGATATTTAGTGTACTAATCAAGATCAAAGCTGCTAATGCATTTAGATCCCATACAAATAGCATCACGATTACCACTACTACTACCACTACTTTGCCGTCTGATAAGCGTCAGACGGATGGTTAGGCTTCCTTTGCGACGTGGACCGATGGGGGTTTGCCTTTGTGATAATAATGCATTTTTA]




>consensus_1050#0
CCGATCAGCTCGCAAGGCTGCAGAATCTGAAGGAATCGAACGCATAAGGCGCCGGTGAGA
GGACGCGTAGAGTGGACGGTATCAGTGCGCGGGGAGGTATTGTGAGCAGGAGAGGGGACG
AGCAGAAGACGGTAGGACACACACACACACACACAATTACACGAAGTAGTTAATTGTTTA
CCGATGCCGATGCACTGTACAACGGCACCGTTCAAAACCGTTCTGTGGACGTCAGTGGAG
AGCCGCGGCCATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTAT
TTTGTGCAAAACTCAATGGTGAATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCA
TTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTCCAAATGGGG
TTTTTCGTTGTTGCTGTAAGTCATTGTCATTGTCATTATCGTTGTCGTGTCAGGTATACA
GATGTTAGGAGAACGTCGTCCAACGGGATATTTAGTGTACTAATCAAGATCAAAGCTGCT
AATGCATTTAGATCCCATACAAATAGCATCACGATTACCACTACTACTACCACTACTTTG
CCGTCTGATAAGCGTCAGACGGATGGTTAGGCTTCCTTTGCGACGTGGACCGATGGGGGT
TTGCCTTTGTGATAATAATGCATTTTTA

consensusID : consensus_1050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [CCGGGCGTTGAGTGGACGGTGTCAGTGCGCGGGAAGGTATTGTGAGCAGGAGAGGGAACGAGCAGAAGATGGGAGGACACACACACACAATTACACGAAGTGGTTAATTGTTTGCCGATGCACTGTACAACTGCACCGTTCAAACCCGTTCTGTGGACGTCAATGGAGAGCCGCGGCTATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATGGTATTTTGTGCAAAACTCAATGGTTCATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTC]

[+] EMBL BM652697             [CCGGGCGTTGAGTGGACGGTGTCAGTGCGCGGGAAGGTATTGTGAGCAGGAGAGGGAACGAGCAGAAGATGGGAGGACACACACACACAATTACACGAAGTGGTTAATTGTTTGCCGATGCACTGTACAACTGCACCGTTCAAACCCGTTCTGTGGACGTCAATGGAGAGCCGCGGCTATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATGGTATTTTGTGCAAAACTCAATGGTTCATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTC]




>consensus_1050#1
CCGGGCGTTGAGTGGACGGTGTCAGTGCGCGGGAAGGTATTGTGAGCAGGAGAGGGAACG
AGCAGAAGATGGGAGGACACACACACACAATTACACGAAGTGGTTAATTGTTTGCCGATG
CACTGTACAACTGCACCGTTCAAACCCGTTCTGTGGACGTCAATGGAGAGCCGCGGCTAT
GCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATGGTATTTTGTGC
AAAACTCAATGGTTCATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAA
TCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1050#0      CCGATCAGCTCGCAAGGCTGCAGAATCTGAAGGAATCGAACGCATAAGGCGCCGGTGAGA 60
consensus_1050#1      ------------------------------------------------------------
                                                                                  

consensus_1050#0      GGACGCGTAGAGTGGACGGTATCAGTGCGCGGGGAGGTATTGTGAGCAGGAGAGGGGACG 120
consensus_1050#1      CCGGGCGTTGAGTGGACGGTGTCAGTGCGCGGGAAGGTATTGTGAGCAGGAGAGGGAACG 60
                          **** *********** ************ ********************** ***

consensus_1050#0      AGCAGAAGACGGTAGGACACACACACACACACACAATTACACGAAGTAGTTAATTGTTTA 180
consensus_1050#1      AGCAGAAGATGGGAGGACACACAC------ACACAATTACACGAAGTGGTTAATTGTTT- 113
                      ********* ** ***********      ***************** *********** 

consensus_1050#0      CCGATGCCGATGCACTGTACAACGGCACCGTTCAAAACCGTTCTGTGGACGTCAGTGGAG 240
consensus_1050#1      -----GCCGATGCACTGTACAACTGCACCGTTCAAACCCGTTCTGTGGACGTCAATGGAG 168
                           ****************** ************ ***************** *****

consensus_1050#0      AGCCGCGGCCATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTAT 300
consensus_1050#1      AGCCGCGGCTATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTAT 228
                      ********* **************************************************

consensus_1050#0      -----TTTGTGCAAAACTCAATGGTGAATGGCAAACGGGGGCCATGTTCGATTGTGAGAG 355
consensus_1050#1      GGTATTTTGTGCAAAACTCAATGGTTCATGGCAAACGGGGGCCATGTTCGATTGTGAGAG 288
                           ********************  *********************************

consensus_1050#0      ATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTCCAAA 415
consensus_1050#1      ATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTC---- 344
                      ********************************************************    

consensus_1050#0      TGGGGTTTTTCGTTGTTGCTGTAAGTCATTGTCATTGTCATTATCGTTGTCGTGTCAGGT 475
consensus_1050#1      ------------------------------------------------------------
                                                                                  

consensus_1050#0      ATACAGATGTTAGGAGAACGTCGTCCAACGGGATATTTAGTGTACTAATCAAGATCAAAG 535
consensus_1050#1      ------------------------------------------------------------
                                                                                  

consensus_1050#0      CTGCTAATGCATTTAGATCCCATACAAATAGCATCACGATTACCACTACTACTACCACTA 595
consensus_1050#1      ------------------------------------------------------------
                                                                                  

consensus_1050#0      CTTTGCCGTCTGATAAGCGTCAGACGGATGGTTAGGCTTCCTTTGCGACGTGGACCGATG 655
consensus_1050#1      ------------------------------------------------------------
                                                                                  

consensus_1050#0      GGGGTTTGCCTTTGTGATAATAATGCATTTTTA 688
consensus_1050#1      ---------------------------------