cluster # 1072

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Anopheles gambiae
cluster # 1072 cluster # 1072 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1072#0 length = 710 sequences # 1

consensus_1072#1 length = 676 sequences # 1

consensusID : consensus_1072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [CCGCCCACGCGTCCGCACAATGGCACGGAACCGCATGCTAGTGTACTTCTTCACCTTGCTGCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATGGTACTGGGGTCCAAGCAAGCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCACGTACAGTGCGGTCGAGCTGGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGTGATCAGCGCGTTTATCGATCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGACGGTCCGTTCATCGATGCGCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGGCACGATCGGTGAGGCCGAACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAAAGACAGCACGGCGGTCAAGGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGTCCGGGCGAACAGCGACGCGGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTATCGCGACCACGAGCATACCGGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGGCCAGACAAACAACCCGTACGATAATCGGCGCACGGTCGGCGGCTCTAGCCGAAAGGGAAGGGTGCGCTTCTGGCCGCTTGCGGGACACCGATCGGATTGGGAACCGACATTTGGAGGTTCGATCCGCA]

[+] EMBL BM581606             [CCGCCCACGCGTCCGCACAATGGCACGGAACCGCATGCTAGTGTACTTCTTCACCTTGCTGCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATGGTACTGGGGTCCAAGCAAGCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCACGTACAGTGCGGTCGAGCTGGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGTGATCAGCGCGTTTATCGATCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGACGGTCCGTTCATCGATGCGCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGGCACGATCGGTGAGGCCGAACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAAAGACAGCACGGCGGTCAAGGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGTCCGGGCGAACAGCGACGCGGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTATCGCGACCACGAGCATACCGGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGGCCAGACAAACAACCCGTACGATAATCGGCGCACGGTCGGCGGCTCTAGCCGAAAGGGAAGGGTGCGCTTCTGGCCGCTTGCGGGACACCGATCGGATTGGGAACCGACATTTGGAGGTTCGATCCGCA]




>consensus_1072#0
CCGCCCACGCGTCCGCACAATGGCACGGAACCGCATGCTAGTGTACTTCTTCACCTTGCT
GCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATGGTACTGGGGTCCAAGCAA
GCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCACGTACAGTGCGGTCGAGCT
GGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGTGATCAGCGCGTTTATCGA
TCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGACGGTCCGTTCATCGATGC
GCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGGCACGATCGGTGAGGCCGA
ACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAAAGACAGCACGGCGGTCAA
GGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGTCCGGGCGAACAGCGACGC
GGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTATCGCGACCACGAGCATACC
GGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGGCCAGACAAACAACCCGTA
CGATAATCGGCGCACGGTCGGCGGCTCTAGCCGAAAGGGAAGGGTGCGCTTCTGGCCGCT
TGCGGGACACCGATCGGATTGGGAACCGACATTTGGAGGTTCGATCCGCA

consensusID : consensus_1072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGCGTAATCGCACCGCACCACAAGGGAGAGAAAGTAGTTACGCGAACTGTGTGCTACTATCGTTTTTCAACAACCGGCGGACAGCAAGCACACACAATGGCACGGAACCGCATGCTAGTGTACTTCTTCACCTTGCTGCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATGGTACTGGGGTCCAAGCAAGCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCACGTACAGTGCGGTCGAGCTGGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGTGATCAGCGCGTTTATCGATCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGACGGTCCGTTCATCGATGCGCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGGCACGATCGGTGAGGCCGAACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAAAGACAGCACGGCGGTCAAGGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGTCCGGGCGAACAGCGACGCGGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTATCGCGACCACGAGCATACCGGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGGCCAGACAAACAACCCG]

[+] EMBL BM585199             [CCGCGTAATCGCACCGCACCACAAGGGAGAGAAAGTAGTTACGCGAACTGTGTGCTACTATCGTTTTTCAACAACCGGCGGACAGCAAGCACACACAATGGCACGGAACCGCATGCTAGTGTACTTCTTCACCTTGCTGCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATGGTACTGGGGTCCAAGCAAGCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCACGTACAGTGCGGTCGAGCTGGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGTGATCAGCGCGTTTATCGATCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGACGGTCCGTTCATCGATGCGCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGGCACGATCGGTGAGGCCGAACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAAAGACAGCACGGCGGTCAAGGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGTCCGGGCGAACAGCGACGCGGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTATCGCGACCACGAGCATACCGGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGGCCAGACAAACAACCCG]




>consensus_1072#1
CCGCGTAATCGCACCGCACCACAAGGGAGAGAAAGTAGTTACGCGAACTGTGTGCTACTA
TCGTTTTTCAACAACCGGCGGACAGCAAGCACACACAATGGCACGGAACCGCATGCTAGT
GTACTTCTTCACCTTGCTGCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATG
GTACTGGGGTCCAAGCAAGCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCAC
GTACAGTGCGGTCGAGCTGGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGT
GATCAGCGCGTTTATCGATCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGA
CGGTCCGTTCATCGATGCGCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGG
CACGATCGGTGAGGCCGAACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAA
AGACAGCACGGCGGTCAAGGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGT
CCGGGCGAACAGCGACGCGGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTAT
CGCGACCACGAGCATACCGGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGG
CCAGACAAACAACCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1072#0      ------------------------------------------------------------
consensus_1072#1      CCGCGTAATCGCACCGCACCACAAGGGAGAGAAAGTAGTTACGCGAACTGTGTGCTACTA 60
                                                                                  

consensus_1072#0      ------------------CCGCCCACGCGTCCGCACAATGGCACGGAACCGCATGCTAGT 42
consensus_1072#1      TCGTTTTTCAACAACCGGCGGACAGCAAGCACACACAATGGCACGGAACCGCATGCTAGT 120
                                        * * *  *  *  * ***************************

consensus_1072#0      GTACTTCTTCACCTTGCTGCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATG 102
consensus_1072#1      GTACTTCTTCACCTTGCTGCACCTGGTGATCGACAAGGTGCTGTACCTGTGCCTGAAATG 180
                      ************************************************************

consensus_1072#0      GTACTGGGGTCCAAGCAAGCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCAC 162
consensus_1072#1      GTACTGGGGTCCAAGCAAGCGGCGGTGCCCGACCCTGCAGCGCAAGCGGCTCCTCGTCAC 240
                      ************************************************************

consensus_1072#0      GTACAGTGCGGTCGAGCTGGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGT 222
consensus_1072#1      GTACAGTGCGGTCGAGCTGGCGCGGATGATACGTACGCGCGAGGTGTCCTGTTACGATGT 300
                      ************************************************************

consensus_1072#0      GATCAGCGCGTTTATCGATCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGA 282
consensus_1072#1      GATCAGCGCGTTTATCGATCGCCTCAACGAGGTCAACCCGCTGGTGAACGCCGTGCTCGA 360
                      ************************************************************

consensus_1072#0      CGGTCCGTTCATCGATGCGCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGG 342
consensus_1072#1      CGGTCCGTTCATCGATGCGCTCGAGGAGGCGCGCCGTATCGACGAGCGGCTGCAGCAGGG 420
                      ************************************************************

consensus_1072#0      CACGATCGGTGAGGCCGAACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAA 402
consensus_1072#1      CACGATCGGTGAGGCCGAACTCGCGGCGAAACCGTTCCTGGGCGTACCGTTCACGACGAA 480
                      ************************************************************

consensus_1072#0      AGACAGCACGGCGGTCAAGGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGT 462
consensus_1072#1      AGACAGCACGGCGGTCAAGGACCGGCTGCACACGCTCGGTATCGTCGCGAGGCGCACGGT 540
                      ************************************************************

consensus_1072#0      CCGGGCGAACAGCGACGCGGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTAT 522
consensus_1072#1      CCGGGCGAACAGCGACGCGGAGTGTGTCCGGCTGATGAAGGAGGCGGGCGCAATTATTAT 600
                      ************************************************************

consensus_1072#0      CGCGACCACGAGCATACCGGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGG 582
consensus_1072#1      CGCGACCACGAGCATACCGGAAATTAATCGATGGCAAGAGACACGCAACAACATTATCGG 660
                      ************************************************************

consensus_1072#0      CCAGACAAACAACCCGTACGATAATCGGCGCACGGTCGGCGGCTCTAGCCGAAAGGGAAG 642
consensus_1072#1      CCAGACAAACAACCCG-------------------------------------------- 676
                      ****************                                            

consensus_1072#0      GGTGCGCTTCTGGCCGCTTGCGGGACACCGATCGGATTGGGAACCGACATTTGGAGGTTC 702
consensus_1072#1      ------------------------------------------------------------
                                                                                  

consensus_1072#0      GATCCGCA 710
consensus_1072#1      --------