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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACGCCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAAAAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCCTTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTTGTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAAAGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGAAATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACACACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCGGTACGCTGTTGCCGTTGATGCTGCTGCTCACAGGATGCAACCGGAAGTACCCACGAGAGAAGGTAGGAGAAAAAGAACCAATAGAGACAGAGAGGT]
[+] EMBL BX611518 [AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACGCCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAAAAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCCTTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTTGTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAAAGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGAAATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACACACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCGGTACGCTGTTGCCGTTGATGCTGCTGCTCACAGGATGCAACCGGAAGTACCCACGAGAGAAGGTAGGAGAAAAAGAACCAATAGAGACAGAGAGGT]
consensusID : consensus_108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CAGCGATTCCGCCGTCAGGAAGGACGCTTTCGGGGGCGATTTGCTGTGGGTCGGATTGCTGTGGGGCGGTGTGGTCGCGGCCGTGCAGGGCTGATCCGCAACGCTCTTCAGGATGTTGTCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGCCGTGTTGAGACGGCGGCCGTTCTCGAGCTCCTGACAGATGCGCGACACGCTGACGGAGTTCTCGGGCAGGTCGATCGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGCTGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTTCACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAGAATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCAGAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG]
[-] EMBL BM628253 [CAGCGATTCCGCCGTCAGGAAGGACGCTTTCGGGGGCGATTTGCTGTGGGTCGGATTGCTGTGGGGCGGTGTGGTCGCGGCCGTGCAGGGCTGATCCGCAACGCTCTTCAGGATGTTGTCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGCCGTGTTGAGACGGCGGCCGTTCTCGAGCTCCTGACAGATGCGCGACACGCTGACGGAGTTCTCGGGCAGGTCGATCGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGCTGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTTCACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAGAATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCAGAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_108#0 AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACG 60
consensus_108#1 ------------------------------------------------------------
consensus_108#0 CCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAA 120
consensus_108#1 ------------------------------------------------------------
consensus_108#0 AAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCC 180
consensus_108#1 --------------------------------------------------CAGCGATTCC 10
** * * ***
consensus_108#0 TTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTT 240
consensus_108#1 GCCG-----TCAGGAAGGACGCT--TTCGGGGGCGATTTGCTGT---GGGTCGGATTGCT 60
* ** ***** * * ** * * * ** ** * * *
consensus_108#0 GTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAA 300
consensus_108#1 GTGGGGCGGTGTGGTCGCGGCCGT-------GCAGGGCTGATCCGCAACGCTCTTCAGGA 113
***** ** * ** *** * * * **** *
consensus_108#0 AGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGA 360
consensus_108#1 TGTTG-TCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGC-CGTGTTGAGAC---- 167
** * * * * ** * * * ** * * ** ** **
consensus_108#0 AATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACA 420
consensus_108#1 GGCGGCCGTTCTCGAG---CTCCTGACAGATGCGCG-ACACGCTGACGGA-GTTCTCGGG 222
* *** * * * ** * ** * * * **** * ** * * *
consensus_108#0 CACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATC 480
consensus_108#1 CAGGTCGAT-CGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATC 281
** * ** * ** * ***********************************
consensus_108#0 GCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCT 540
consensus_108#1 GCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCT 341
************************************************************
consensus_108#0 CGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCC---GGTACGC 597
consensus_108#1 CGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGC 401
************************************************** *******
consensus_108#0 TGTTGCCGTTGATGCTGCTGCTCA-CAGGATGCAA-CCGGAAGTACCCACGAGAGAAGGT 655
consensus_108#1 TGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTT 461
**************** * * * * ** * ***** * * *
consensus_108#0 AGGAGAA-----AAAGAACCAATAGAGACAGAGAGGT----------------------- 687
consensus_108#1 CACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAG 521
* * * * * *** * * **** *
consensus_108#0 ------------------------------------------------------------
consensus_108#1 AATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCA 581
consensus_108#0 --------------------------------------------
consensus_108#1 GAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG 625
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||