cluster # 1090

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Anopheles gambiae
cluster # 1090 cluster # 1090 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1090#0 length = 329 sequences # 1

consensus_1090#1 length = 324 sequences # 1

consensusID : consensus_1090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [CCGTTTTTTTTTTTTAGGGTGATAATTAGAATCAATTTTTATTGCTCATTACTGGCGCGATTGCAGGTAAAATTGTTGTGGAAGTGTTTAAAGCGTTAAGAGAGCAAGTAGAACGAAGCTTACAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCAACTCCTTTCTGGCAGACGACTGAGTGCTACTGTCGATGTCAAGATTAATTCGCAACAGGTCTAACCGATTGCGTATGAAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGTCAACAATATGGGCTGAACAAGGTAAAGGAATAAAGAG]

[+] EMBL BM614282             [CCGTTTTTTTTTTTTAGGGTGATAATTAGAATCAATTTTTATTGCTCATTACTGGCGCGATTGCAGGTAAAATTGTTGTGGAAGTGTTTAAAGCGTTAAGAGAGCAAGTAGAACGAAGCTTACAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCAACTCCTTTCTGGCAGACGACTGAGTGCTACTGTCGATGTCAAGATTAATTCGCAACAGGTCTAACCGATTGCGTATGAAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGTCAACAATATGGGCTGAACAAGGTAAAGGAATAAAGAG]




>consensus_1090#0
CCGTTTTTTTTTTTTAGGGTGATAATTAGAATCAATTTTTATTGCTCATTACTGGCGCGA
TTGCAGGTAAAATTGTTGTGGAAGTGTTTAAAGCGTTAAGAGAGCAAGTAGAACGAAGCT
TACAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCAACTCCTTTCTGGCAGAC
GACTGAGTGCTACTGTCGATGTCAAGATTAATTCGCAACAGGTCTAACCGATTGCGTATG
AAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGTCAACAATA
TGGGCTGAACAAGGTAAAGGAATAAAGAG

consensusID : consensus_1090#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [ATAATTGTTGTAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCGACTCCTTTCTGGCAGACGACTGAGTGCTACTGTCGATGTCAAGATTAGTTCGCAACAGGTCTAACCGATTGCGTATGAAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGTCAACAATATGGGTTATCACAGCTTCCAGTGTTGTCGGATCCAGCGGGACCAAGTCAGTGTTCACCCTCTCTTTGCTATCGAGGCAACTGATCTTTAGCGTGTCCAATCCGAACATCAGCTGAATGAGCCGACCAGTGTAGACGG]

[-] EMBL BX614045             [ATAATTGTTGTAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCGACTCCTTTCTGGCAGACGACTGAGTGCTACTGTCGATGTCAAGATTAGTTCGCAACAGGTCTAACCGATTGCGTATGAAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGTCAACAATATGGGTTATCACAGCTTCCAGTGTTGTCGGATCCAGCGGGACCAAGTCAGTGTTCACCCTCTCTTTGCTATCGAGGCAACTGATCTTTAGCGTGTCCAATCCGAACATCAGCTGAATGAGCCGACCAGTGTAGACGG]




>consensus_1090#1
ATAATTGTTGTAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCGACTCCTTTC
TGGCAGACGACTGAGTGCTACTGTCGATGTCAAGATTAGTTCGCAACAGGTCTAACCGAT
TGCGTATGAAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGT
CAACAATATGGGTTATCACAGCTTCCAGTGTTGTCGGATCCAGCGGGACCAAGTCAGTGT
TCACCCTCTCTTTGCTATCGAGGCAACTGATCTTTAGCGTGTCCAATCCGAACATCAGCT
GAATGAGCCGACCAGTGTAGACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1090#0      CCGTTTTTTTTTTTTAGGGTGATAATTAGAATCAATTTTTATTGCTCATTACTGGCGCGA 60
consensus_1090#1      ------------------------------------------------------------
                                                                                  

consensus_1090#0      TTGCAGGTAAAATTGTTGTGGAAGTGTTTAAAGCGTTAAGAGAGCAAGTAGAACGAAGCT 120
consensus_1090#1      ----------------------------------------------------ATAATTGT 8
                                                                          *  *   *

consensus_1090#0      TACAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCAACTCCTTTCTGGCAGAC 180
consensus_1090#1      TGTAGCATTATTCTCTACTGTCGGATGTTTCTCTTCTTCTTCGACTCCTTTCTGGCAGAC 68
                      *  *************************************** *****************

consensus_1090#0      GACTGAGTGCTACTGTCGATGTCAAGATTAATTCGCAACAGGTCTAACCGATTGCGTATG 240
consensus_1090#1      GACTGAGTGCTACTGTCGATGTCAAGATTAGTTCGCAACAGGTCTAACCGATTGCGTATG 128
                      ****************************** *****************************

consensus_1090#0      AAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGTCAACAATA 300
consensus_1090#1      AAATTGCGCACCATGCCTGGCGTTATATGTTGCTTTTGCTGCTGGAACACGTCAACAATA 188
                      ************************************************************

consensus_1090#0      TGGGCTGA-ACAAGGTAAAGGAATAAAGAG------------------------------ 329
consensus_1090#1      TGGGTTATCACAGCTTCCAGTGTTGTCGGATCCAGCGGGACCAAGTCAGTGTTCACCCTC 248
                      **** *   ***   *  **   *   *                                

consensus_1090#0      ------------------------------------------------------------
consensus_1090#1      TCTTTGCTATCGAGGCAACTGATCTTTAGCGTGTCCAATCCGAACATCAGCTGAATGAGC 308
                                                                                  

consensus_1090#0      ----------------
consensus_1090#1      CGACCAGTGTAGACGG 324