cluster # 113

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Anopheles gambiae
cluster # 113 cluster # 113 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_113#0 length = 665 sequences # 1

consensus_113#1 length = 405 sequences # 1

consensusID : consensus_113#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CCGCCCACGCGTCCGCGATGCTGCCGTCGATTTCGCCCTTCTGCCTGAAGGTGGAGACCTGGCTGCGCCTCGCCGGGCTGAAGTATGAGAACATCGACCATAAGCTGAAGCTGCGCTCGAAGAAGGGACAGCTGCCGTTCGTCGAGGTCAATGGGGAGGAGATTGCCGACTCGACCATCATCATGCAGGAGCTGGCGACGCGCTACGACAAGGACCTGGACGCCGCCCTGACCCAGGAGCAGCGCAACATTGCCCACGCGATGATTTCGATGCTGGAGAACCATCTCGTCTGGGTGGTGCTGTCCTGGCGCAGCAAGAACACGGAACAGATGCTCAAGGGCTACAAGATCAACCTGCAGCACGCGCTCGGCAGCCGTCTGCCGAATGCGCTGCTGAACTTCTTCTTCAAATTCCAGTTCAGCCGCAAGGGTGCTAAAAAGGTGAAAGCTCAGGGCCTGGGCGTCCACAAGCCGGAGGAAATCGAGGAGTTCGGTCGCAAGGATCTGAAGGTGCTGTCCGAGCTGCTGGCCGATAAGCCATTCTTCTTCGGTGATGAACCCACCACGCTCGACTGTGTTGCATTCTCCGTGTTGGCCCAAATTCACTTCATTCTGGACGAGGTTAAGTACGGTCTGAAGGAGTTCATGCAGGAGAACTGCCCGAAC]

[+] EMBL BM591208             [CCGCCCACGCGTCCGCGATGCTGCCGTCGATTTCGCCCTTCTGCCTGAAGGTGGAGACCTGGCTGCGCCTCGCCGGGCTGAAGTATGAGAACATCGACCATAAGCTGAAGCTGCGCTCGAAGAAGGGACAGCTGCCGTTCGTCGAGGTCAATGGGGAGGAGATTGCCGACTCGACCATCATCATGCAGGAGCTGGCGACGCGCTACGACAAGGACCTGGACGCCGCCCTGACCCAGGAGCAGCGCAACATTGCCCACGCGATGATTTCGATGCTGGAGAACCATCTCGTCTGGGTGGTGCTGTCCTGGCGCAGCAAGAACACGGAACAGATGCTCAAGGGCTACAAGATCAACCTGCAGCACGCGCTCGGCAGCCGTCTGCCGAATGCGCTGCTGAACTTCTTCTTCAAATTCCAGTTCAGCCGCAAGGGTGCTAAAAAGGTGAAAGCTCAGGGCCTGGGCGTCCACAAGCCGGAGGAAATCGAGGAGTTCGGTCGCAAGGATCTGAAGGTGCTGTCCGAGCTGCTGGCCGATAAGCCATTCTTCTTCGGTGATGAACCCACCACGCTCGACTGTGTTGCATTCTCCGTGTTGGCCCAAATTCACTTCATTCTGGACGAGGTTAAGTACGGTCTGAAGGAGTTCATGCAGGAGAACTGCCCGAAC]




>consensus_113#0
CCGCCCACGCGTCCGCGATGCTGCCGTCGATTTCGCCCTTCTGCCTGAAGGTGGAGACCT
GGCTGCGCCTCGCCGGGCTGAAGTATGAGAACATCGACCATAAGCTGAAGCTGCGCTCGA
AGAAGGGACAGCTGCCGTTCGTCGAGGTCAATGGGGAGGAGATTGCCGACTCGACCATCA
TCATGCAGGAGCTGGCGACGCGCTACGACAAGGACCTGGACGCCGCCCTGACCCAGGAGC
AGCGCAACATTGCCCACGCGATGATTTCGATGCTGGAGAACCATCTCGTCTGGGTGGTGC
TGTCCTGGCGCAGCAAGAACACGGAACAGATGCTCAAGGGCTACAAGATCAACCTGCAGC
ACGCGCTCGGCAGCCGTCTGCCGAATGCGCTGCTGAACTTCTTCTTCAAATTCCAGTTCA
GCCGCAAGGGTGCTAAAAAGGTGAAAGCTCAGGGCCTGGGCGTCCACAAGCCGGAGGAAA
TCGAGGAGTTCGGTCGCAAGGATCTGAAGGTGCTGTCCGAGCTGCTGGCCGATAAGCCAT
TCTTCTTCGGTGATGAACCCACCACGCTCGACTGTGTTGCATTCTCCGTGTTGGCCCAAA
TTCACTTCATTCTGGACGAGGTTAAGTACGGTCTGAAGGAGTTCATGCAGGAGAACTGCC
CGAAC

consensusID : consensus_113#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTGAGCGAGCAGGCTCAGGTCTACTGCACGATCGCACTGAACGGTGGCGTCTTCTGGGTGAAGCACACGTCCGACTTCCTGAAGGTGAACTAAGCACTGGACGGGGACGTCAACCAACCGGTGTGTATGTCTGCGGTCCCGGTGACCGGCCACCCGGGGATGTACCTTTTTACGAGTGGTTCGGAGCAGTATTATGGAGCGGAGAGCGAGCAAACCTACTACTAGAGAGCTGACTGTTTTTTGTTCACCATCGGGAAGACTGTGTCTTTCCGATTTTTACCCAACCGGACAATTCATTCTCATTAGCTTACGAAGATTTTCCACACCCCAAATCTTCCCGTTTTACCTGAAATGACAATAAAAACACAACATTATTGAC]

[+] EMBL BM614463             [CCGCGGACGCGTGGGCGGACGCGTGGGTGAGCGAGCAGGCTCAGGTCTACTGCACGATCGCACTGAACGGTGGCGTCTTCTGGGTGAAGCACACGTCCGACTTCCTGAAGGTGAACTAAGCACTGGACGGGGACGTCAACCAACCGGTGTGTATGTCTGCGGTCCCGGTGACCGGCCACCCGGGGATGTACCTTTTTACGAGTGGTTCGGAGCAGTATTATGGAGCGGAGAGCGAGCAAACCTACTACTAGAGAGCTGACTGTTTTTTGTTCACCATCGGGAAGACTGTGTCTTTCCGATTTTTACCCAACCGGACAATTCATTCTCATTAGCTTACGAAGATTTTCCACACCCCAAATCTTCCCGTTTTACCTGAAATGACAATAAAAACACAACATTATTGAC]




>consensus_113#1
CCGCGGACGCGTGGGCGGACGCGTGGGTGAGCGAGCAGGCTCAGGTCTACTGCACGATCG
CACTGAACGGTGGCGTCTTCTGGGTGAAGCACACGTCCGACTTCCTGAAGGTGAACTAAG
CACTGGACGGGGACGTCAACCAACCGGTGTGTATGTCTGCGGTCCCGGTGACCGGCCACC
CGGGGATGTACCTTTTTACGAGTGGTTCGGAGCAGTATTATGGAGCGGAGAGCGAGCAAA
CCTACTACTAGAGAGCTGACTGTTTTTTGTTCACCATCGGGAAGACTGTGTCTTTCCGAT
TTTTACCCAACCGGACAATTCATTCTCATTAGCTTACGAAGATTTTCCACACCCCAAATC
TTCCCGTTTTACCTGAAATGACAATAAAAACACAACATTATTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_113#0      CCGCCCACGCGTCCGCGATGCTGCCGTCGATTTCGCCCTTCTGCCTGAAGGTGGAGACCT 60
consensus_113#1      ------------------------------------------------------------
                                                                                 

consensus_113#0      GGCTGCGCCTCGCCGGGCTGAAGTATGAGAACATCGACCATAAGCTGAAGCTGCGCTCGA 120
consensus_113#1      ------------------------------------------------------------
                                                                                 

consensus_113#0      AGAAGGGACAGCTGCCGTTCGTCGAGGTCAATGGGGAGGAGATTGCCGACTCGACCATCA 180
consensus_113#1      ------------------------------------------------------------
                                                                                 

consensus_113#0      TCATGCAGGAGCTGGCGACGCGCTACGACAAGGACCTGGACGCCGCCCTGACCCAG-GAG 239
consensus_113#1      -------------------------CCGCGGACGCGTGGGCGGACGCGTGGGTGAGCGAG 35
                                              *  *     * *** **    * **    ** ***

consensus_113#0      CAGCGCAACATTGCCCACGCGATGATTTCGATGCTGGAGAACCATCTCGTCTGGGTGGTG 299
consensus_113#1      CAGGCTCAGGTCTACTGCACGATC------GCACTGAACGGTGGCGTCTTCTGGGTGAAG 89
                     ***    *  *   *  * ****          *** *        ** ********  *

consensus_113#0      CTGTCCTGGCGCAGCAAGAACACGGAACAGATGCTCAAGGGCTACAAGATCAACCTGCAG 359
consensus_113#1      CACACGTCCGACTTCCTGAAGGTGAACTAAGCACTGGACGGGGACGTCAACCAACCGGTG 149
                     *   * *    *  *  ***   * *  *    **  * **  **   * * * * *  *

consensus_113#0      CACGCGCTCGGCAGCCGTCTGCCGAATGCGCTGCTGAACTTCTTCTTCAAATTCCAGTTC 419
consensus_113#1      TGTATG-TCTGCGGTC--CCGGTGACCGGCCACCCGGGGATGTACCTT--TTTACGAGTG 204
                          * ** ** * *  * *  **  *  *  * *    * * * *    ** *   * 

consensus_113#0      AGCCGCAAGGGTGCTAAAAAGGTGAAAGCTCAGGGCCTGGGCGTCCACAAGCCGGAGGAA 479
consensus_113#1      GTTCGGAGCAGTATTATGGAGCGGAGAGCGAGCAAACCTACTACTAGAGAGCTGACTGTT 264
                        ** *   **  **   **  ** ***       *            *** *   *  

consensus_113#0      ATCGAGGAGTTCGGTCGCAAGGATCTGAAGGTGCTGTCCGAGCTGCTGGCCGATAAGCCA 539
consensus_113#1      TTT--TGTTCACCATCGGGAAGACTGTGTCTTTCCGATTTTTACCCAACCGGACAATTCA 322
                      *    *    *  ***  * **        * * *         *   * ** **  **

consensus_113#0      TTCTTCTTCGGTGATGAA--CCCACCACGCTC--GACTGTGTTGCATTCTCCGTGTTGGC 595
consensus_113#1      TTCTCATTAGCTTACGAAGATTTTCCACACCCCAAATCTTCCCGTTTTACCTGAAATGAC 382
                     ****  ** * * * ***      **** * *   *   *   *  **  * *   ** *

consensus_113#0      C-CAAATTCACTTCATTCTGGACGAGGTTAAGTACGGTCTGAAGGAGTTCATGCAGGAGA 654
consensus_113#1      AATAAAAACACAACATTATTGAC------------------------------------- 405
                        ***  ***  **** * ***                                     

consensus_113#0      ACTGCCCGAAC 665
consensus_113#1      -----------