cluster # 1135

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Anopheles gambiae
cluster # 1135 cluster # 1135 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1135#0 length = 613 sequences # 1

consensus_1135#1 length = 408 sequences # 1

consensusID : consensus_1135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [GAGAAATACAAAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACCGAAAGAAGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTACAAACAGAGAGAGACACACACACACGCAAACACCGCCATGGGTGCGATAAGAGCCGATTACTACTACGTAACTGGCTTACTAGGATGTTATCTATCATCTCCCTCCTTCCAACTCCCGCTCCTCGGGATCGGCCTAGTTCCTGCGTCGGTGGGCAAACCCCCAACGCCCCGAGGGCGTTGCGTGCCATCTTGGAGTGTTTAACGATTTAA]

[+] EMBL BM624789             [GAGAAATACAAAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACCGAAAGAAGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTACAAACAGAGAGAGACACACACACACGCAAACACCGCCATGGGTGCGATAAGAGCCGATTACTACTACGTAACTGGCTTACTAGGATGTTATCTATCATCTCCCTCCTTCCAACTCCCGCTCCTCGGGATCGGCCTAGTTCCTGCGTCGGTGGGCAAACCCCCAACGCCCCGAGGGCGTTGCGTGCCATCTTGGAGTGTTTAACGATTTAA]




>consensus_1135#0
GAGAAATACAAAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGC
AGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGA
GAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGC
AAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACCG
AAAGAAGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTT
CGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCG
TTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTACAAACAGAGAGAGACAC
ACACACACGCAAACACCGCCATGGGTGCGATAAGAGCCGATTACTACTACGTAACTGGCT
TACTAGGATGTTATCTATCATCTCCCTCCTTCCAACTCCCGCTCCTCGGGATCGGCCTAG
TTCCTGCGTCGGTGGGCAAACCCCCAACGCCCCGAGGGCGTTGCGTGCCATCTTGGAGTG
TTTAACGATTTAA

consensusID : consensus_1135#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [CCGAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACTGAAAGAGGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTAC]

[+] EMBL BM613424             [CCGAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACTGAAAGAGGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTAC]




>consensus_1135#1
CCGAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAA
GAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAA
CACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGT
TAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAA
ACTGAAAGAGGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGA
GCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGC
CCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1135#0      GAGAAATACAAAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGC 60
consensus_1135#1      --------CCGAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGC 52
                              *  *************************************************

consensus_1135#0      AGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGA 120
consensus_1135#1      AGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGA 112
                      ************************************************************

consensus_1135#0      GAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------------AGCAAA 168
consensus_1135#1      GAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAA 172
                      ******************************************            ******

consensus_1135#0      CGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGA 228
consensus_1135#1      CGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGA 232
                      ************************************************************

consensus_1135#0      CCAGTCAAACCGAAAGAAGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAG 288
consensus_1135#1      CCAGTCAAACTGAAAGAGGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAG 292
                      ********** ****** ******************************************

consensus_1135#0      CGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTT 348
consensus_1135#1      CGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTT 352
                      ************************************************************

consensus_1135#0      GGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTACAAAC 408
consensus_1135#1      GGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTAC---- 408
                      ********************************************************    

consensus_1135#0      AGAGAGAGACACACACACACGCAAACACCGCCATGGGTGCGATAAGAGCCGATTACTACT 468
consensus_1135#1      ------------------------------------------------------------
                                                                                  

consensus_1135#0      ACGTAACTGGCTTACTAGGATGTTATCTATCATCTCCCTCCTTCCAACTCCCGCTCCTCG 528
consensus_1135#1      ------------------------------------------------------------
                                                                                  

consensus_1135#0      GGATCGGCCTAGTTCCTGCGTCGGTGGGCAAACCCCCAACGCCCCGAGGGCGTTGCGTGC 588
consensus_1135#1      ------------------------------------------------------------
                                                                                  

consensus_1135#0      CATCTTGGAGTGTTTAACGATTTAA 613
consensus_1135#1      -------------------------