These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGAGCGAGCAGGCACACGGCAAAGGGTGGCATTTGACATTGGCAATGGGCAAACGACAGCGCAGCGACTACCGTGTGGACGGTGGTGCCTCCTCGACCGAATCGAACGACGAAACGCTACTCGCCACCAAAATGAACGGCGGCGAGATGTGCACGCACATACAGAAGTCCATCGACCTGAACACGATACGCAAACAGATCAAAAGCAACGAGGAGTGGTGCAGAAGGACGTGCAGCAAGTGTGCGGACGAGCAGCAGGCGGCCCGCGGCGGCAGTTATGTCAACGAGCCGCTGAAAACGCCGAACGATGTCAACGGTGATACCTCGCTGTGGTTCTGCCTCAAATGTGGCACACAGCTCTGTGGCCGGAACAAAAACCAGCACGCTTTGCAGCATTATGCAACGCCTCGCTCCGATATGCACGCCCTTGCAATCAACACCACCACGCTGGATGTGTGGTGCTACACCTGCAGCGTGCCGGTCGATCCGTACGCCAAGCCGAAGCTGCTCGATATAGTCGAGTTTGTCAAGCGCG] [+] EMBL BM613396 [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGAGCGAGCAGGCACACGGCAAAGGGTGGCATTTGACATTGGCAATGGGCAAACGACAGCGCAGCGACTACCGTGTGGACGGTGGTGCCTCCTCGACCGAATCGAACGACGAAACGCTACTCGCCACCAAAATGAACGGCGGCGAGATGTGCACGCACATACAGAAGTCCATCGACCTGAACACGATACGCAAACAGATCAAAAGCAACGAGGAGTGGTGCAGAAGGACGTGCAGCAAGTGTGCGGACGAGCAGCAGGCGGCCCGCGGCGGCAGTTATGTCAACGAGCCGCTGAAAACGCCGAACGATGTCAACGGTGATACCTCGCTGTGGTTCTGCCTCAAATGTGGCACACAGCTCTGTGGCCGGAACAAAAACCAGCACGCTTTGCAGCATTATGCAACGCCTCGCTCCGATATGCACGCCCTTGCAATCAACACCACCACGCTGGATGTGTGGTGCTACACCTGCAGCGTGCCGGTCGATCCGTACGCCAAGCCGAAGCTGCTCGATATAGTCGAGTTTGTCAAGCGCG] consensusID : consensus_1138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGGTAAGCGACCCCTTTTACATTTCGTTCCTCTTCGCTTGCCGAAACTTTAACACGGGGTTTGGCTATCTTTTTTTTGTGGGGTAGCTGTTTTTTTTATGCCACTGCATTTTGACTTGTACAGCGAGTTGGAATTTTTATTATTACACAAAGCATGAATCGTTCGATAATGCAAGAATGCTCGTGTGGATACCCAATAAATTGGATGCAGCACTCGGTG] [+] EMBL BM657460 [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGGTAAGCGACCCCTTTTACATTTCGTTCCTCTTCGCTTGCCGAAACTTTAACACGGGGTTTGGCTATCTTTTTTTTGTGGGGTAGCTGTTTTTTTTATGCCACTGCATTTTGACTTGTACAGCGAGTTGGAATTTTTATTATTACACAAAGCATGAATCGTTCGATAATGCAAGAATGCTCGTGTGGATACCCAATAAATTGGATGCAGCACTCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1138#0 CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATC 60 consensus_1138#1 CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATC 60 ************************************************************ consensus_1138#0 AAAAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGAGCGAGCAGGCACACG-GCAAAGG 119 consensus_1138#1 AAAAAAAAAAAAAAAAAA---GGAATAGCAAAAGCG-GTAAGCGACCCCTTTTACATTTC 116 ****************** *************** * *** * * ** consensus_1138#0 GTGGCATTTGACATTGGCAATGGGCAAACG-ACAGCGCAGCGA-CTACCGTGTGGACGGT 177 consensus_1138#1 GTTCCTCTTCGC-TTGCCGAAACTTTAACACGGGGTTTGGCTATCTTTTTTTTGTGGGGT 175 ** * ** * *** * * *** * ** * ** * ** *** consensus_1138#0 GG-TGCCTCCTCGACCGAATCGAACGACGAAACGCTACTCGCCACCAAAATGAACGGCGG 236 consensus_1138#1 AGCTGTTTTTTTTATGCCACTGCATTTTGACTTG-TACAGCGAGTTGGAATTTTTATTAT 234 * ** * * * * * * ** * *** *** consensus_1138#0 CGAGATGTGCACGCA-CATACAGAAGTCCATCGACCTGAACACGATACGCAAACAGATCA 295 consensus_1138#1 TACACAAAGCATGAATCGTTCGATAATGCAAGAATGCTCGTGTGGATACCCAATAAATTG 294 *** * * * * * * * ** * * * ** * ** consensus_1138#0 AAAGCAACGAGGAGTGGTGCAGAAGGACGTGCAGCAAGTGTGCGGACGAGCAGCAGGCGG 355 consensus_1138#1 GATGCAGCACTCGGTG-------------------------------------------- 310 * *** * *** consensus_1138#0 CCCGCGGCGGCAGTTATGTCAACGAGCCGCTGAAAACGCCGAACGATGTCAACGGTGATA 415 consensus_1138#1 ------------------------------------------------------------ consensus_1138#0 CCTCGCTGTGGTTCTGCCTCAAATGTGGCACACAGCTCTGTGGCCGGAACAAAAACCAGC 475 consensus_1138#1 ------------------------------------------------------------ consensus_1138#0 ACGCTTTGCAGCATTATGCAACGCCTCGCTCCGATATGCACGCCCTTGCAATCAACACCA 535 consensus_1138#1 ------------------------------------------------------------ consensus_1138#0 CCACGCTGGATGTGTGGTGCTACACCTGCAGCGTGCCGGTCGATCCGTACGCCAAGCCGA 595 consensus_1138#1 ------------------------------------------------------------ consensus_1138#0 AGCTGCTCGATATAGTCGAGTTTGTCAAGCGCG 628 consensus_1138#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||