cluster # 1144

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Anopheles gambiae
cluster # 1144 cluster # 1144 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1144#0 length = 625 sequences # 1

consensus_1144#1 length = 275 sequences # 1

consensusID : consensus_1144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGATTGTGATGATTTAATCCGTCGTCTGTAGAGCAGTGGTGGTAAATATTTAGCTGAAGCAACCAACAACCAATGTAAGTTTCCTTTCCCCTTCTCTCCCCATCTCGATATGTTCTCCTGCCTAGTGTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTAAAAGGGGAAACTCCCTGTTAAGCCCTCCTACCCCCAGTAGCACACCGTATCGCCCAGTCACCACGTGGTCATTCTTTGCTGCTACAGCTATCCCCTCCCACCTTCCCCCATCCACGCCGATTTGCGCGCAATGCTATATGATGAACGTCGCCTCTCTGGCGCGCCGTATGTGATCGTGTGATTCGTGAATGTTTTCTTTGTTTTTGTGGACAAAAGAACAACAAGAAACGCTAGTCTGTTTTATATAAATGTAACACACCCCCTCCTCCCCTTCCTCCCCTCTGTACATGGACCTGTAACTATATAGCTATATATATATAAAATGTATATGTGAATATCGTTTTATTTTTTAAACTAT]

[+] EMBL BM613336             [CCGATTGTGATGATTTAATCCGTCGTCTGTAGAGCAGTGGTGGTAAATATTTAGCTGAAGCAACCAACAACCAATGTAAGTTTCCTTTCCCCTTCTCTCCCCATCTCGATATGTTCTCCTGCCTAGTGTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTAAAAGGGGAAACTCCCTGTTAAGCCCTCCTACCCCCAGTAGCACACCGTATCGCCCAGTCACCACGTGGTCATTCTTTGCTGCTACAGCTATCCCCTCCCACCTTCCCCCATCCACGCCGATTTGCGCGCAATGCTATATGATGAACGTCGCCTCTCTGGCGCGCCGTATGTGATCGTGTGATTCGTGAATGTTTTCTTTGTTTTTGTGGACAAAAGAACAACAAGAAACGCTAGTCTGTTTTATATAAATGTAACACACCCCCTCCTCCCCTTCCTCCCCTCTGTACATGGACCTGTAACTATATAGCTATATATATATAAAATGTATATGTGAATATCGTTTTATTTTTTAAACTAT]




>consensus_1144#0
CCGATTGTGATGATTTAATCCGTCGTCTGTAGAGCAGTGGTGGTAAATATTTAGCTGAAG
CAACCAACAACCAATGTAAGTTTCCTTTCCCCTTCTCTCCCCATCTCGATATGTTCTCCT
GCCTAGTGTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
GAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACA
TGTGGATGGGAATGGGAGCAGAAGCTAAAAGGGGAAACTCCCTGTTAAGCCCTCCTACCC
CCAGTAGCACACCGTATCGCCCAGTCACCACGTGGTCATTCTTTGCTGCTACAGCTATCC
CCTCCCACCTTCCCCCATCCACGCCGATTTGCGCGCAATGCTATATGATGAACGTCGCCT
CTCTGGCGCGCCGTATGTGATCGTGTGATTCGTGAATGTTTTCTTTGTTTTTGTGGACAA
AAGAACAACAAGAAACGCTAGTCTGTTTTATATAAATGTAACACACCCCCTCCTCCCCTT
CCTCCCCTCTGTACATGGACCTGTAACTATATAGCTATATATATATAAAATGTATATGTG
AATATCGTTTTATTTTTTAAACTAT

consensusID : consensus_1144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [CGAGGCAAGAATCGCACGAGNNGNAATGTAAGTTTCCTTTCCCCTTTCTCTCCCCATCTCCATATGTTCTCCTGCCAAGTGTACAGAAAAGAGAGGGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTTAAAGGGGAAACTCCCTGTTAAGCCACACCCTCCGTACCCCGCAGTAGCTCACCGTATCGCCCAGTCACCACGTGG]

[+] EMBL BX468045             [CGAGGCAAGAATCGCACGAGNNGNAATGTAAGTTTCCTTTCCCCTTTCTCTCCCCATCTCCATATGTTCTCCTGCCAAGTGTACAGAAAAGAGAGGGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTTAAAGGGGAAACTCCCTGTTAAGCCACACCCTCCGTACCCCGCAGTAGCTCACCGTATCGCCCAGTCACCACGTGG]




>consensus_1144#1
CGAGGCAAGAATCGCACGAGNNGNAATGTAAGTTTCCTTTCCCCTTTCTCTCCCCATCTC
CATATGTTCTCCTGCCAAGTGTACAGAAAAGAGAGGGAGAGAGAGAGAGAGAAGAAAAAC
AATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGAT
GGGAATGGGAGCAGAAGCTTAAAGGGGAAACTCCCTGTTAAGCCACACCCTCCGTACCCC
GCAGTAGCTCACCGTATCGCCCAGTCACCACGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1144#0      CCGATTGTGATGATTTAATCCGTCGTCTGTAGAGCAGTGGTGGTAAATATTTAGCTGAAG 60
consensus_1144#1      -------------------------------------------------CGAGGCAAGAA 11
                                                                           **   * 

consensus_1144#0      CAAC-CAACAACCAATGTAAGTTTCCTTTCCCCTT-CTCTCCCCATCTCGATATGTTCTC 118
consensus_1144#1      TCGCACGAGNNGNAATGTAAGTTTCCTTTCCCCTTTCTCTCCCCATCTCCATATGTTCTC 71
                         * * *     ********************** ************* **********

consensus_1144#0      CTGCCTAGTGTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 178
consensus_1144#1      CTGCCAAGTGTACAGAAAAGAGAGGGAGAGAGAGAGAGAGA------------------- 112
                      ***** *********** ****** ****************                   

consensus_1144#0      AAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATA 238
consensus_1144#1      -AGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATA 171
                       ***********************************************************

consensus_1144#0      CATGTGGATGGGAATGGGAGCAGAAGCTAAAAGGGGAAACTCCCTGTTAAGCC-----CT 293
consensus_1144#1      CATGTGGATGGGAATGGGAGCAGAAGCTTAAAGGGGAAACTCCCTGTTAAGCCACACCCT 231
                      **************************** ************************     **

consensus_1144#0      CC-TACCCC-CAGTAGCACACCGTATCGCCCAGTCACCACGTGGTCATTCTTTGCTGCTA 351
consensus_1144#1      CCGTACCCCGCAGTAGCTCACCGTATCGCCCAGTCACCACGTGG---------------- 275
                      ** ****** ******* **************************                

consensus_1144#0      CAGCTATCCCCTCCCACCTTCCCCCATCCACGCCGATTTGCGCGCAATGCTATATGATGA 411
consensus_1144#1      ------------------------------------------------------------
                                                                                  

consensus_1144#0      ACGTCGCCTCTCTGGCGCGCCGTATGTGATCGTGTGATTCGTGAATGTTTTCTTTGTTTT 471
consensus_1144#1      ------------------------------------------------------------
                                                                                  

consensus_1144#0      TGTGGACAAAAGAACAACAAGAAACGCTAGTCTGTTTTATATAAATGTAACACACCCCCT 531
consensus_1144#1      ------------------------------------------------------------
                                                                                  

consensus_1144#0      CCTCCCCTTCCTCCCCTCTGTACATGGACCTGTAACTATATAGCTATATATATATAAAAT 591
consensus_1144#1      ------------------------------------------------------------
                                                                                  

consensus_1144#0      GTATATGTGAATATCGTTTTATTTTTTAAACTAT 625
consensus_1144#1      ----------------------------------