cluster # 1150

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Anopheles gambiae
cluster # 1150 cluster # 1150 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1150#0 length = 692 sequences # 1

consensus_1150#1 length = 564 sequences # 1

consensusID : consensus_1150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [GACTAGATCAGGAAGCGTTTGTATGTGTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGTTTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTTTGTGGCGGTGACGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAGAGAGAGAGAGTTAAGGAACGAGGGAAACAGAAAGTTTATTTATTCCTGTTTGCTTGTTGACCCGTGCTCGACTCGAGTCAAACTGTGCCGATAGTTTATTCTGGTCGTTAAAGCTGTTTATTGTATTCTATTTAGTAAGATGTAGAGTAGCTCCAACAACATCCCCACACACGCACCCATGCAGCTTTAGTTACCTGCCAATCAATGGTAGATTATGTGGGGTTTTTAGTAGTTACTTCACAAATATTTCAAGTGTGAGAAGGCATCTTGATTTGATAGTAATTATAAATCTCTATGTCCGAGGGCCTAGCACAGTGAATCCGTTTTGCGAATGCTTTATTGTTGTGACCACACACGTACACACC]

[+] EMBL BX620530             [GACTAGATCAGGAAGCGTTTGTATGTGTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGTTTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTTTGTGGCGGTGACGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAGAGAGAGAGAGTTAAGGAACGAGGGAAACAGAAAGTTTATTTATTCCTGTTTGCTTGTTGACCCGTGCTCGACTCGAGTCAAACTGTGCCGATAGTTTATTCTGGTCGTTAAAGCTGTTTATTGTATTCTATTTAGTAAGATGTAGAGTAGCTCCAACAACATCCCCACACACGCACCCATGCAGCTTTAGTTACCTGCCAATCAATGGTAGATTATGTGGGGTTTTTAGTAGTTACTTCACAAATATTTCAAGTGTGAGAAGGCATCTTGATTTGATAGTAATTATAAATCTCTATGTCCGAGGGCCTAGCACAGTGAATCCGTTTTGCGAATGCTTTATTGTTGTGACCACACACGTACACACC]




>consensus_1150#0
GACTAGATCAGGAAGCGTTTGTATGTGTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTG
CAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGA
AGTACCGCGTGTTTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTTTG
TGGCGGTGACGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTG
GCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACG
GCGCCTACATCTCAAACAGCGAGAGAGAGAGAGAGAGTTAAGGAACGAGGGAAACAGAAA
GTTTATTTATTCCTGTTTGCTTGTTGACCCGTGCTCGACTCGAGTCAAACTGTGCCGATA
GTTTATTCTGGTCGTTAAAGCTGTTTATTGTATTCTATTTAGTAAGATGTAGAGTAGCTC
CAACAACATCCCCACACACGCACCCATGCAGCTTTAGTTACCTGCCAATCAATGGTAGAT
TATGTGGGGTTTTTAGTAGTTACTTCACAAATATTTCAAGTGTGAGAAGGCATCTTGATT
TGATAGTAATTATAAATCTCTATGTCCGAGGGCCTAGCACAGTGAATCCGTTTTGCGAAT
GCTTTATTGTTGTGACCACACACGTACACACC

consensusID : consensus_1150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CCGCTAGATCAGGAAGCGTTTGTGTTTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGATTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTATGTGGCGGTGAATGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAAAGAGAGAGAGAGAGAGAGAGCATAAGGGCAAGAGACTGGATACAACACACCACTCATACACACGCGTCGGTCGGTCACAGCTTCTCCAGCCATATTGCACAGTGCGTGGAATCAAGCGCTCCATTCATCGATTCCGATGCCACCGCTTTGCAGCCGACTGTGCACGTTGGACCAGCCCGACCAGCCTGAATGGTAGGCTACCGCCGCAGCACGCGACGATGGGCGACCATACGCTAG]

[+] EMBL BM647120             [CCGCTAGATCAGGAAGCGTTTGTGTTTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGATTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTATGTGGCGGTGAATGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAAAGAGAGAGAGAGAGAGAGAGCATAAGGGCAAGAGACTGGATACAACACACCACTCATACACACGCGTCGGTCGGTCACAGCTTCTCCAGCCATATTGCACAGTGCGTGGAATCAAGCGCTCCATTCATCGATTCCGATGCCACCGCTTTGCAGCCGACTGTGCACGTTGGACCAGCCCGACCAGCCTGAATGGTAGGCTACCGCCGCAGCACGCGACGATGGGCGACCATACGCTAG]




>consensus_1150#1
CCGCTAGATCAGGAAGCGTTTGTGTTTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGC
AAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAA
GTACCGCGTGATTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTATGT
GGCGGTGAATGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTG
GCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACG
GCGCCTACATCTCAAACAGCGAGAGAAAGAGAGAGAGAGAGAGAGAGCATAAGGGCAAGA
GACTGGATACAACACACCACTCATACACACGCGTCGGTCGGTCACAGCTTCTCCAGCCAT
ATTGCACAGTGCGTGGAATCAAGCGCTCCATTCATCGATTCCGATGCCACCGCTTTGCAG
CCGACTGTGCACGTTGGACCAGCCCGACCAGCCTGAATGGTAGGCTACCGCCGCAGCACG
CGACGATGGGCGACCATACGCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1150#0      -GACTAGATCAGGAAGCGTTTGTATGTGTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGT 59
consensus_1150#1      CCGCTAGATCAGGAAGCGTTTG--TGTTTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGT 58
                         *******************  *** ********************************

consensus_1150#0      GCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACG 119
consensus_1150#1      GCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACG 118
                      ************************************************************

consensus_1150#0      AAGTACCGCGTGTTTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTTT 179
consensus_1150#1      AAGTACCGCGTGATTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTAT 178
                      ************ ********************************************* *

consensus_1150#0      GTGGCGGTGA-CGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCG 238
consensus_1150#1      GTGGCGGTGAATGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCG 238
                      **********  ************************************************

consensus_1150#0      TGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGA 298
consensus_1150#1      TGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGA 298
                      ************************************************************

consensus_1150#0      CGGCGCCTACATCTCAAACAGCGAGAGAGAGAGAGAGAGTTAAGGAACGAGGGAAACAGA 358
consensus_1150#1      CGGCGCCTACATCTCAAACAGCGAGAGAAAGAGAGAGAGAGAGAGAGAGCATAAGGGCAA 358
                      **************************** **********  *  **  *    *     *

consensus_1150#0      AAGTTTATTTATTCCTGTTTGCTTGTTGACCCGTGCTCGACTCGAGTCAAACTGTGCCGA 418
consensus_1150#1      GAGACTGGATACAACACACCACTCATACACACGCGTCGG--TCGGTCACAGCTTCTCCAG 416
                       **  *   **   *      **  *  ** ** *   *  ***     * **   **  

consensus_1150#0      TAGTTTATTCTGGTCGTTAAAGCTGTTTATTGTATTCTATTTAGTAAGATGTAGAGTAGC 478
consensus_1150#1      CCATATTGCACAGTGCGTGGAATCAAGCGCTCCATTC-ATCGATTCCGATGCCACCGCTT 475
                         * *      **   *  *         *  **** **  * *  ****         

consensus_1150#0      TCCAACAACATCCCCACAC---ACGCACCCATGCAGCTTTAGTTACCTGCCAAT-CAATG 534
consensus_1150#1      TGCAGCCGACTGTGCACGTTGGACCAGCCCGACCAGCCTGAATGGTAGGCTACCGCCGCA 535
                      * ** *    *   ***     **   ***   **** * * *     ** *   *    

consensus_1150#0      GTAGATTATGTGGGGTTTTTAGTAGTTACTTCACAAATATTTCAAGTGTGAGAAGGCATC 594
consensus_1150#1      GCACGCGACGATGGGCGACCATACGCTAG------------------------------- 564
                      * *    * *  ***     *   * **                                

consensus_1150#0      TTGATTTGATAGTAATTATAAATCTCTATGTCCGAGGGCCTAGCACAGTGAATCCGTTTT 654
consensus_1150#1      ------------------------------------------------------------
                                                                                  

consensus_1150#0      GCGAATGCTTTATTGTTGTGACCACACACGTACACACC 692
consensus_1150#1      --------------------------------------