cluster # 1156

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Anopheles gambiae
cluster # 1156 cluster # 1156 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1156#0 length = 601 sequences # 1

consensus_1156#1 length = 521 sequences # 1

consensusID : consensus_1156#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CCGGCCAATCGACAGTGCAACCACATCTTGTGCTGCTGCTGATTGGAAGCGTTTTCAAATCATAGGAATTACGGTCACCAACAAGCCAACCAGAAAGCATTCCCACCCGCAGAATGTAGCGATCGATTGCGGGCGTCTGGATTGCGGAAAGAAAACAACCAACGGGCCTTCCTTCGTGGCAAGTGTTCAAGTGCTTCGTAAGTTGGCAGGCTCAGGCTGAGTCATCGTTTAGAATCGAACGCAACGTAGCGTGTCTAGAATCAATCAGCGCGAACAGCAAGAGACGAATCGAACGAACAACCCAACAAACATACAAACCCACAAGCGGAGTGGGAGGCGTTGCTGCTGCCACAGGCAGTAAGATAAAAGAAAGCACCAGCAAGAGCGAGCGAGAGCGAGCACAGAGTTGAATGCAAAGGGCTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACCTACCCGTCCGCCCCGATCGGCATCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGTCCCCGGCTGCAGGTCAACCGCGTGCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTGGCCTACACCTGCTACCA]

[+] EMBL BM613223             [CCGGCCAATCGACAGTGCAACCACATCTTGTGCTGCTGCTGATTGGAAGCGTTTTCAAATCATAGGAATTACGGTCACCAACAAGCCAACCAGAAAGCATTCCCACCCGCAGAATGTAGCGATCGATTGCGGGCGTCTGGATTGCGGAAAGAAAACAACCAACGGGCCTTCCTTCGTGGCAAGTGTTCAAGTGCTTCGTAAGTTGGCAGGCTCAGGCTGAGTCATCGTTTAGAATCGAACGCAACGTAGCGTGTCTAGAATCAATCAGCGCGAACAGCAAGAGACGAATCGAACGAACAACCCAACAAACATACAAACCCACAAGCGGAGTGGGAGGCGTTGCTGCTGCCACAGGCAGTAAGATAAAAGAAAGCACCAGCAAGAGCGAGCGAGAGCGAGCACAGAGTTGAATGCAAAGGGCTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACCTACCCGTCCGCCCCGATCGGCATCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGTCCCCGGCTGCAGGTCAACCGCGTGCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTGGCCTACACCTGCTACCA]




>consensus_1156#0
CCGGCCAATCGACAGTGCAACCACATCTTGTGCTGCTGCTGATTGGAAGCGTTTTCAAAT
CATAGGAATTACGGTCACCAACAAGCCAACCAGAAAGCATTCCCACCCGCAGAATGTAGC
GATCGATTGCGGGCGTCTGGATTGCGGAAAGAAAACAACCAACGGGCCTTCCTTCGTGGC
AAGTGTTCAAGTGCTTCGTAAGTTGGCAGGCTCAGGCTGAGTCATCGTTTAGAATCGAAC
GCAACGTAGCGTGTCTAGAATCAATCAGCGCGAACAGCAAGAGACGAATCGAACGAACAA
CCCAACAAACATACAAACCCACAAGCGGAGTGGGAGGCGTTGCTGCTGCCACAGGCAGTA
AGATAAAAGAAAGCACCAGCAAGAGCGAGCGAGAGCGAGCACAGAGTTGAATGCAAAGGG
CTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACCTACCCGTCCGCCCCGA
TCGGCATCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGTCCCCGGCTGCAGGTCAACC
GCGTGCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTGGCCTACACCTGCTACC
A

consensusID : consensus_1156#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [CCGCTCGTTTAGCAACCATCAGTGCGCGTTTTTTTGCTGCTGCTACTTCTTCCTCCTGTGCCGAGATTAAATGTTTGTTGTACATATTTTGATTATATTGTTTTCCTTTTTTTTTGTTGCAGAAAATCAATCAGCGCGAACAACTAAGAGAGAGACGAATCGAACGAACAACCCAACAAACATACAAACCCACAAGCGGAGTGGGAAGGGAGGCGTCTGTACTGCTGCCATAGAAGCAGGAAGATAAAAGAGAGCACCAGCAAGAGCAAGCGAGAGCGAGCACAGAGTTGAATGCAAAGGGCTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACCTACCCGTCCGCCCCGATCGGCGTCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGCCCCCGGCTGCAGGTGAACCGCGTCCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTGGCCTACACCTGCTACCACATGACGCGGAAGCCCATCTCGGTGGTCAAGTCGGTGCT]

[+] EMBL BM625732             [CCGCTCGTTTAGCAACCATCAGTGCGCGTTTTTTTGCTGCTGCTACTTCTTCCTCCTGTGCCGAGATTAAATGTTTGTTGTACATATTTTGATTATATTGTTTTCCTTTTTTTTTGTTGCAGAAAATCAATCAGCGCGAACAACTAAGAGAGAGACGAATCGAACGAACAACCCAACAAACATACAAACCCACAAGCGGAGTGGGAAGGGAGGCGTCTGTACTGCTGCCATAGAAGCAGGAAGATAAAAGAGAGCACCAGCAAGAGCAAGCGAGAGCGAGCACAGAGTTGAATGCAAAGGGCTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACCTACCCGTCCGCCCCGATCGGCGTCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGCCCCCGGCTGCAGGTGAACCGCGTCCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTGGCCTACACCTGCTACCACATGACGCGGAAGCCCATCTCGGTGGTCAAGTCGGTGCT]




>consensus_1156#1
CCGCTCGTTTAGCAACCATCAGTGCGCGTTTTTTTGCTGCTGCTACTTCTTCCTCCTGTG
CCGAGATTAAATGTTTGTTGTACATATTTTGATTATATTGTTTTCCTTTTTTTTTGTTGC
AGAAAATCAATCAGCGCGAACAACTAAGAGAGAGACGAATCGAACGAACAACCCAACAAA
CATACAAACCCACAAGCGGAGTGGGAAGGGAGGCGTCTGTACTGCTGCCATAGAAGCAGG
AAGATAAAAGAGAGCACCAGCAAGAGCAAGCGAGAGCGAGCACAGAGTTGAATGCAAAGG
GCTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACCTACCCGTCCGCCCCG
ATCGGCGTCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGCCCCCGGCTGCAGGTGAAC
CGCGTCCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTGGCCTACACCTGCTAC
CACATGACGCGGAAGCCCATCTCGGTGGTCAAGTCGGTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1156#0      CCGGCCAATCGACAGTGCAACCACATCTTGTGCTGCTGCTGATTGGAAGCGTTTTCAAAT 60
consensus_1156#1      ------------------------------------------------------------
                                                                                  

consensus_1156#0      CATAGGAATTACGGTCACCAACAAGCCAACCAGAAAGCATTCCCACCCGCAGAATGTAGC 120
consensus_1156#1      ------------------------------------------CCGCTCG-----TTTAGC 13
                                                                ** * **     * ****

consensus_1156#0      GATCGATTGCGGGCGTCTGGATTGCGGAAAGAAAACAACCAACGGGCCTTCCTTCGTGGC 180
consensus_1156#1      AACCATCAGTGCGCGTTTTT-TTGCTG--------CTGCTACTT--CTTCCTCCTGTGCC 62
                       * *    * * **** *   **** *        *  * *     * * *    *** *

consensus_1156#0      AAGTGTTCAAGTGCTTCGTAAGTTG-GCAGGCTCAGGCTGAGTCATCGTTTAGAATCGAA 239
consensus_1156#1      GAG--ATTAAATGTTT-----GTTGTACATATTTTGATTA---TATTGTTTTCCTTTTTT 112
                       **   * ** ** **     ****  **   *  *  *     ** ****    *    

consensus_1156#0      CGCAACGTAGCGTGTCTAGAATCAATCAGCGCGAACAGC-----AAGAGACGAATCGAAC 294
consensus_1156#1      TTTGTTGCAG-------AAAATCAATCAGCGCGAACAACTAAGAGAGAGACGAATCGAAC 165
                            * **       * ****************** *      ***************

consensus_1156#0      GAACAACCCAACAAACATACAAACCCACAAGCGGAGTGGGA-----GGCGT---TGCTGC 346
consensus_1156#1      GAACAACCCAACAAACATACAAACCCACAAGCGGAGTGGGAAGGGAGGCGTCTGTACTGC 225
                      *****************************************     *****   * ****

consensus_1156#0      TGCCACAG--GCAGTAAGATAAAAGAAAGCACCAGCAAGAGCGAGCGAGAGCGAGCACAG 404
consensus_1156#1      TGCCATAGAAGCAGGAAGATAAAAGAGAGCACCAGCAAGAGCAAGCGAGAGCGAGCACAG 285
                      ***** **  **** *********** *************** *****************

consensus_1156#0      AGTTGAATGCAAAGGGCTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACC 464
consensus_1156#1      AGTTGAATGCAAAGGGCTCGCGTTCCGTCCACCGGACGACAGCAAAGGATGAGCTCGACC 345
                      ************************************************************

consensus_1156#0      TACCCGTCCGCCCCGATCGGCATCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGTCCC 524
consensus_1156#1      TACCCGTCCGCCCCGATCGGCGTCCGGCTGATCAGCTACCTGTCCGCCAAGCTATGCCCC 405
                      ********************* ********************************** ***

consensus_1156#0      CGGCTGCAGGTCAACCGCGTGCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTG 584
consensus_1156#1      CGGCTGCAGGTGAACCGCGTCCTGTGGTTCAAATGTTCCGTCCTCGGGCTCACGTACCTG 465
                      *********** ******** ***************************************

consensus_1156#0      GCCTACACCTGCTACCA--------------------------------------- 601
consensus_1156#1      GCCTACACCTGCTACCACATGACGCGGAAGCCCATCTCGGTGGTCAAGTCGGTGCT 521
                      *****************