These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGCAATGTACAGCCAAACCAAAAGCCACCTTCCCATCAGCAACAGGCAGTCCCAGCCTCAGCACAACAGCAGCAGCCACCACAGCAACAACATACCGGAAACGTTGCATCTTCCCCACAACAGCAGCCACAGCCACAGCAACAGCAACCACCTGCAGCACCGGCACAGCCATCCGTTGTACAGGTGAAACACTAGAACGACTCCGTCTTGAAGCGACAAGCGTTGGATGGATAAACTGCAGCCAAACGAAAGCATGAAACAGCCGAATCAAACTGAATCAACAACACCCACAATGACGCGCCAATGATGAAACAACATTCTCGTTTTAGCGTTCCGAAGCTTCCACACATAACCAAACAGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAAAATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGATTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATCAGCAGATTAACGCAATTATCTTG] [+] EMBL BM613183 [CCGCAATGTACAGCCAAACCAAAAGCCACCTTCCCATCAGCAACAGGCAGTCCCAGCCTCAGCACAACAGCAGCAGCCACCACAGCAACAACATACCGGAAACGTTGCATCTTCCCCACAACAGCAGCCACAGCCACAGCAACAGCAACCACCTGCAGCACCGGCACAGCCATCCGTTGTACAGGTGAAACACTAGAACGACTCCGTCTTGAAGCGACAAGCGTTGGATGGATAAACTGCAGCCAAACGAAAGCATGAAACAGCCGAATCAAACTGAATCAACAACACCCACAATGACGCGCCAATGATGAAACAACATTCTCGTTTTAGCGTTCCGAAGCTTCCACACATAACCAAACAGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAAAATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGATTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATCAGCAGATTAACGCAATTATCTTG] consensusID : consensus_1159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAACATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGACTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATAGCAGATTAACGCAATTATCTTGAATACTACTTTGTGATGAAATTACTGTAGCGTGTAGCGAATTACCCGTGTAATGTTCGTTTTTTTTTATTACTCTTTTTTGTCAAATATATATATGAAGTAGTCTAGCAAGAAGAAAACAATTTGCC] [+] EMBL BM646325 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAACATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGACTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATAGCAGATTAACGCAATTATCTTGAATACTACTTTGTGATGAAATTACTGTAGCGTGTAGCGAATTACCCGTGTAATGTTCGTTTTTTTTTATTACTCTTTTTTGTCAAATATATATATGAAGTAGTCTAGCAAGAAGAAAACAATTTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1159#0 CCGCAATGTACAGCCAAACCAAAAGCCACCTTCCCATCAGCAACAGGCAGTCCCAGCCTC 60 consensus_1159#1 ------------------------------------------------------------ consensus_1159#0 AGCACAACAGCAGCAGCCACCACAGCAACAACATACCGGAAACGTTGCATCTTCCCCACA 120 consensus_1159#1 ------------------------------------------------------------ consensus_1159#0 ACAGCAGCCACAGCCACAGCAACAGCAACCACCTGCAGCACCGGCACAGCCATCCGTTGT 180 consensus_1159#1 ------------------------------------------------------------ consensus_1159#0 ACAGGTGAAACACTAGAACGACTCCGTCTTGAAGCGACAAGCGTTGGATGGATAAACTGC 240 consensus_1159#1 ------------------------------------------------------------ consensus_1159#0 AGCCAAACGAAAGCATGAAACAGCCGAATCAAACTGAATCAACAACACCCACAATGACGC 300 consensus_1159#1 ------------------------------------------------------------ consensus_1159#0 GCCAATGATGAAACAACATTCTCGTTTTAGCGTTCCGAAGCTTCCACACATAACCAAACA 360 consensus_1159#1 -------------------------------CCGCCCACGCGTCCGCCCACG--CGTCCG 27 ** * ** *** * ** * * consensus_1159#0 GCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAAAATGTAGATAGGTAA 420 consensus_1159#1 GCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAACATGTAGATAGGTAA 87 ********************************************* ************** consensus_1159#0 CGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACAC 480 consensus_1159#1 CGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACAC 147 ************************************************************ consensus_1159#0 ATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGA 540 consensus_1159#1 ATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGA 207 ************************************************************ consensus_1159#0 GATTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAA 600 consensus_1159#1 GACTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAA 267 ** ********************************************************* consensus_1159#0 CATTACCATTTATCAGCAGATTAACGCAATTATCTTG----------------------- 637 consensus_1159#1 CATTACCATTTAT-AGCAGATTAACGCAATTATCTTGAATACTACTTTGTGATGAAATTA 326 ************* *********************** consensus_1159#0 ------------------------------------------------------------ consensus_1159#1 CTGTAGCGTGTAGCGAATTACCCGTGTAATGTTCGTTTTTTTTTATTACTCTTTTTTGTC 386 consensus_1159#0 -------------------------------------------- consensus_1159#1 AAATATATATATGAAGTAGTCTAGCAAGAAGAAAACAATTTGCC 430 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||