cluster # 1203

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1203 cluster # 1203 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1203#0 length = 856 sequences # 1

consensus_1203#1 length = 809 sequences # 1

consensusID : consensus_1203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 856
fasta sequence

                              [GGCAGAATCGGCACGNGGCAACTTACTGAAGCCAATGGTTACATTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTTGGGATATGTTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGGCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGGAATAACTCCAACCCAATCAATACAAATTGCAATAGGANGGATTCCGCAATTACCACAGCGGTTCTAAAGATCTAAACCCCATTGCCACCCGCGAATTTTACCAAACCCATTTTTACCTCTAATCACAACATGCGCACATGTTTAACCAAATAGCCCAAAACAAGGTTTAAAACAAACTCCAATTCCGATTTCNGAGTCCTCCCTTANNAGGGGGTATGGGCAACGAAANTGTGAGNCANCTTGAAAACGCNACCGAGAAANAAGAACGACACCCTGGGATTCGCGGAACTCGGGAATCCGCGAATNGGCGCCAGGTGNGAACCACAGGGAANCCCCAGGTTANGCGAAATGACCCGGATGGGGGGCTCACGACATAGGGATAGNCAAGGCGA]

[+] EMBL BX468423             [GGCAGAATCGGCACGNGGCAACTTACTGAAGCCAATGGTTACATTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTTGGGATATGTTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGGCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGGAATAACTCCAACCCAATCAATACAAATTGCAATAGGANGGATTCCGCAATTACCACAGCGGTTCTAAAGATCTAAACCCCATTGCCACCCGCGAATTTTACCAAACCCATTTTTACCTCTAATCACAACATGCGCACATGTTTAACCAAATAGCCCAAAACAAGGTTTAAAACAAACTCCAATTCCGATTTCNGAGTCCTCCCTTANNAGGGGGTATGGGCAACGAAANTGTGAGNCANCTTGAAAACGCNACCGAGAAANAAGAACGACACCCTGGGATTCGCGGAACTCGGGAATCCGCGAATNGGCGCCAGGTGNGAACCACAGGGAANCCCCAGGTTANGCGAAATGACCCGGATGGGGGGCTCACGACATAGGGATAGNCAAGGCGA]




>consensus_1203#0
GGCAGAATCGGCACGNGGCAACTTACTGAAGCCAATGGTTACATTGTAAGTTTTTGTTCA
ACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGA
TTTAAATTTTTATTTTTGGGATATGTTTTGATGTACATTTTAAATTAAGTTAACATAGTT
TGACGCAGGACATTTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTAC
TTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGA
GCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGC
ATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGGCGGTGAAA
TAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGGAATAACTCCAACCCAA
TCAATACAAATTGCAATAGGANGGATTCCGCAATTACCACAGCGGTTCTAAAGATCTAAA
CCCCATTGCCACCCGCGAATTTTACCAAACCCATTTTTACCTCTAATCACAACATGCGCA
CATGTTTAACCAAATAGCCCAAAACAAGGTTTAAAACAAACTCCAATTCCGATTTCNGAG
TCCTCCCTTANNAGGGGGTATGGGCAACGAAANTGTGAGNCANCTTGAAAACGCNACCGA
GAAANAAGAACGACACCCTGGGATTCGCGGAACTCGGGAATCCGCGAATNGGCGCCAGGT
GNGAACCACAGGGAANCCCCAGGTTANGCGAAATGACCCGGATGGGGGGCTCACGACATA
GGGATAGNCAAGGCGA

consensusID : consensus_1203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 809
fasta sequence

                              [TTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTGGGATATGTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGCCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGAATAACTCCAACCAATCAATACAATTGCAATAGAGGATTCCGCAATTACCACAGCGGTTCTAAAATCTAACCCCATTGCCACCCGCAATTTACCAAACCCATTTTACTCTAATCACAACATGCAACATGTAACAATAGCCCAAACAGGTTAACAAACTCAATTCGTTTCGATCTCTTTGGTTGCACGATTTACACTAAAACACAAAAACACCTGCATCGATCGTATCGATTTGCAGTGACCACGATCCCGTTCGAATACCGTTTGGCTCGATTGTTTAGGCAAACCGCAAGATGANAGCGCAAGTAAAATCAGCTGGCAAGATTGTCACTACATCTTTAACAGCTAAACTTAACAGGAAACAAAATTAAACAAAGACTGAACAAACAAACCA]

[+] EMBL AL931980             [TTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTGGGATATGTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGCCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGAATAACTCCAACCAATCAATACAATTGCAATAGAGGATTCCGCAATTACCACAGCGGTTCTAAAATCTAACCCCATTGCCACCCGCAATTTACCAAACCCATTTTACTCTAATCACAACATGCAACATGTAACAATAGCCCAAACAGGTTAACAAACTCAATTCGTTTCGATCTCTTTGGTTGCACGATTTACACTAAAACACAAAAACACCTGCATCGATCGTATCGATTTGCAGTGACCACGATCCCGTTCGAATACCGTTTGGCTCGATTGTTTAGGCAAACCGCAAGATGANAGCGCAAGTAAAATCAGCTGGCAAGATTGTCACTACATCTTTAACAGCTAAACTTAACAGGAAACAAAATTAAACAAAGACTGAACAAACAAACCA]




>consensus_1203#1
TTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATA
AGCTTAGGTAGAGTCGATTTAAATTTTTATTTTGGGATATGTTTGATGTACATTTTAAAT
TAAGTTAACATAGTTTGACGCAGGACATTTGCTTACTAAGAACAGGTGTTGGTAGGCAAA
GTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTA
TATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAA
CAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCA
ACCAGCCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGAAT
AACTCCAACCAATCAATACAATTGCAATAGAGGATTCCGCAATTACCACAGCGGTTCTAA
AATCTAACCCCATTGCCACCCGCAATTTACCAAACCCATTTTACTCTAATCACAACATGC
AACATGTAACAATAGCCCAAACAGGTTAACAAACTCAATTCGTTTCGATCTCTTTGGTTG
CACGATTTACACTAAAACACAAAAACACCTGCATCGATCGTATCGATTTGCAGTGACCAC
GATCCCGTTCGAATACCGTTTGGCTCGATTGTTTAGGCAAACCGCAAGATGANAGCGCAA
GTAAAATCAGCTGGCAAGATTGTCACTACATCTTTAACAGCTAAACTTAACAGGAAACAA
AATTAAACAAAGACTGAACAAACAAACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1203#0      GGCAGAATCGGCACGNGGCAACTTACTGAAGCCAATGGTTACATTGTAAGTTTTTGTTCA 60
consensus_1203#1      -------------------------------------------TTGTAAGTTTTTGTTCA 17
                                                                 *****************

consensus_1203#0      ACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGA 120
consensus_1203#1      ACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGA 77
                      ************************************************************

consensus_1203#0      TTTAAATTTTTATTTTTGGGATATGTTTTGATGTACATTTTAAATTAAGTTAACATAGTT 180
consensus_1203#1      TTTAAATTTTTATTTT-GGGATATGTTT-GATGTACATTTTAAATTAAGTTAACATAGTT 135
                      **************** *********** *******************************

consensus_1203#0      TGACGCAGGACATTTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTAC 240
consensus_1203#1      TGACGCAGGACATTT-GCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTAC 194
                      *************** ********************************************

consensus_1203#0      TTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGA 300
consensus_1203#1      TTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGA 254
                      ************************************************************

consensus_1203#0      GCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGC 360
consensus_1203#1      GCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGC 314
                      ************************************************************

consensus_1203#0      ATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGGCGGTGAAA 420
consensus_1203#1      ATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGCCGGTGAAA 374
                      *************************************************** ********

consensus_1203#0      TAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGGAATAACTCCAACCCAA 480
consensus_1203#1      TAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAG-AATAACTCCAACC-AA 432
                      ******************************************* ************* **

consensus_1203#0      TCAATACAAATTGCAATAGGANGGATTCCGCAATTACCACAGCGGTTCTAAAGATCTAAA 540
consensus_1203#1      TCAATACAA-TTGCAATAG--AGGATTCCGCAATTACCACAGCGGTTCTAAA-ATCTAA- 487
                      ********* *********   ****************************** ****** 

consensus_1203#0      CCCCATTGCCACCCGCGAATTTTACCAAACCCATTTTTACCTCTAATCACAACATGCGCA 600
consensus_1203#1      CCCCATTGCCACCCGCAA--TTTACCAAACCCATTTT--ACTCTAATCACAACATGCA-A 542
                      **************** *  *****************   *****************  *

consensus_1203#0      CATGTTTAACCAAATAGCCCAAAACAAGGTTTAAAACAAACTCCAATTCCGATTTCNGAG 660
consensus_1203#1      CATG--TAAC--AATAGCCCAAA-CAGGTTAACAAACTCAATTCGTTTCGATCTCTTTGG 597
                      ****  ****  *********** ** * *   ****  * * *  ***    *     *

consensus_1203#0      TCCTCC--CTTANNAGGGGGTATGGGCAACGAAANTGTGAGNCANCTTGAA--AACGCNA 716
consensus_1203#1      TTGCACGATTTACACTAAAACACAAA-AACACCTGCATCGATCGTATCGATTTGCAGTGA 656
                      *    *   ***         *     ***       *    *   * **      *  *

consensus_1203#0      CCGAGAAANAAGAACGACACCCTGGGATTCGCGGAACTCGGGAATCCGCGA-ATNGGCGC 775
consensus_1203#1      CCACGATCCCGTTCGAATACCGTTTGGCTCGATTGTTTAGGCAAACCGCAAGATGANAGC 716
                      **  **          * *** *  *  ***      * ** ** **** * **    **

consensus_1203#0      -CAGGTGNGAACCACAGGGAAN-------CCCCAGGTTANGCGAAATGACCCGGATGGGG 827
consensus_1203#1      GCAAGTAAAATCAGCTGGCAAGATTGTCACTACATCTTTAACAGCTAAACTTAACAGGAA 776
                       ** **   * *  * ** **        *  **  **   *      **      **  

consensus_1203#0      GGCTCACGACATAGGGATAGNCAAGGCGA---- 856
consensus_1203#1      ACAAAATTAAACAAAGACTGAACAAACAAACCA 809
                           *  * * *  **  *   *  * *