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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACACACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTGCAGCAACAGTTGTTATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGCGTGCGACGATCGAGCGTCGGAACTTACCTTTGCTGCCCGGTTGACTCGGGGCCTGCGGAACCCATGTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAACCGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTTTGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTTGCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG]
[+] EMBL BX468620 [CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACACACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTGCAGCAACAGTTGTTATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGCGTGCGACGATCGAGCGTCGGAACTTACCTTTGCTGCCCGGTTGACTCGGGGCCTGCGGAACCCATGTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAACCGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTTTGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTTGCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG]
consensusID : consensus_1207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACACACACACAACTCAAACCACCACCACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGATTCTTGTCCTTGAGCAGGGCCAGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCGCGCTGCATTTGTTTCTTGTCGTTGCGGTGCCAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGTCCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAATTCCATGTCCCGTGGGCGTGGNTGTTGCTGTTCTTCGGGGCGCCAGTATAAACGCTTACCGAGCTCGGACGCTGCCAGTGGCGCCAATGGGAACGGTGGATTTGGGTCGAGTACACGCTGAGATCATGCTGTCCGTTGGGGTGGGAAAGCGGCTTGCTTGGACGGTACCGCAGCCGTGCCATTNTGTGTACGGCAGGGTACGGGCTTGGGTTCG]
[+] EMBL BX468593 [AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACACACACACAACTCAAACCACCACCACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGATTCTTGTCCTTGAGCAGGGCCAGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCGCGCTGCATTTGTTTCTTGTCGTTGCGGTGCCAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGTCCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAATTCCATGTCCCGTGGGCGTGGNTGTTGCTGTTCTTCGGGGCGCCAGTATAAACGCTTACCGAGCTCGGACGCTGCCAGTGGCGCCAATGGGAACGGTGGATTTGGGTCGAGTACACGCTGAGATCATGCTGTCCGTTGGGGTGGGAAAGCGGCTTGCTTGGACGGTACCGCAGCCGTGCCATTNTGTGTACGGCAGGGTACGGGCTTGGGTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1207#0 CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACA 60
consensus_1207#1 -AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACA 59
***** **** *** * ***************** ******************
consensus_1207#0 CACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGC 120
consensus_1207#1 CACACACAACTCAAACCACCACC-ACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGC 118
*********************** ************************************
consensus_1207#0 TCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGA 180
consensus_1207#1 TCGAATCCCGGCAGCGCCGCGT-ACTTACGTAACGATCTTGTGATCACACACGTTACAGA 177
********************** *************************************
consensus_1207#0 TCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTT 240
consensus_1207#1 TCGG-ATTCTTGTCCTTGAGCA-GGGCCAG-CGCACTACCGTTCGCTACCGGATCCTGTT 234
**** ***************** ******* *****************************
consensus_1207#0 CCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTG 300
consensus_1207#1 CCTGCGGTTGTGTCGCTGTACTGTC-GCG--CTGCATTTGTTTC-TTGTCGTTGCGGTGC 290
************************* *** ********* ** ***** *****
consensus_1207#0 CAG-CAACAGTTGTT-ATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGC-GTGCGACGA 357
consensus_1207#1 CAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGT 350
*** ***** ***** ******************* ************* ********
consensus_1207#0 TCGAGCGTCGGAACTTACCTTT-GCTGCCCGGTTGACTCGGGG---CCTGCGGAACCCAT 413
consensus_1207#1 CCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAAT 410
* * ******* *** ** **** *** ****** ******** * **
consensus_1207#0 GTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAAC 473
consensus_1207#1 TCCATGTCC-CGTGGGCGTGGN--TGTT--GCTGTTCTTC--GGGGCGCCAG-TATAAAC 462
***** * * * ***** ** * **** ***** *** ***** ** ***
consensus_1207#0 CGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTT 533
consensus_1207#1 GCTTACC--GAGCTCGGACGC-TGCCAGT--GGCG-CCAAT---GGGAACGG--TGGATT 511
***** ********** ****** **** **** ** ***** ** **
consensus_1207#0 TGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTT 593
consensus_1207#1 TGGGTCGA-GTACACG-CTGAGATCATGCTGTCC--GTTGGG--GTGGGAAAGCGGCTT- 564
******** ******* *************** * ****** * ** **********
consensus_1207#0 GCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG 653
consensus_1207#1 --GCTTGG---ACGGTACC--GCAG--CCGTG-CCAT-TNTGTGTACGGCAGGGTACGGG 613
* **** * **** * **** ***** **** * ********** ****** **
consensus_1207#0 ----------
consensus_1207#1 CTTGGGTTCG 623
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||