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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[CATGTTCCGGCTGTACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAGGAAGTTCTCCAACACCACGTACCTTTTCGACAATCAAAACATGAAGGATCTGTACCTGGCCATGAGCCCGGTCGACCACCAGCAGTACCCGTGCGACAACCGAAACTACAGCTGGCGTCTGTACTTCGATGTTGCCGTGCCCGGGCTGAAGAAATACTTCTTCAAGGAGGACCTCAACAATGTCAAGCGAGCCCGCCAGGCGATGCGCAAGAAGGAGCTGATCGTTAACACTACGCTGTTTCTAATCGTCGGTCTGATGCTGCTCCAGCTCTACTACCTACTGCGCTAGGCAACGCACGCGCGTTTGCAACGCTTCGGTCCAAGTAGGCCGGTTTCGGACGATCTATGCAAATGATGTTCCGTGGTATTACTCCCCCTCCCCAAGAGAAAATGAATCCCTCCCCAAAACCCCACAGGTGCATAGATCATAGCGCCGTGATGCGTTCGGGTCCATCGCCTGCTTCAGGGCCAACTGCTTGTGGTGCAAAGGCCCACACACATACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGANGGCAGGGATGGTCGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTA]
[+] EMBL BX624717 [CATGTTCCGGCTGTACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAGGAAGTTCTCCAACACCACGTACCTTTTCGACAATCAAAACATGAAGGATCTGTACCTGGCCATGAGCCCGGTCGACCACCAGCAGTACCCGTGCGACAACCGAAACTACAGCTGGCGTCTGTACTTCGATGTTGCCGTGCCCGGGCTGAAGAAATACTTCTTCAAGGAGGACCTCAACAATGTCAAGCGAGCCCGCCAGGCGATGCGCAAGAAGGAGCTGATCGTTAACACTACGCTGTTTCTAATCGTCGGTCTGATGCTGCTCCAGCTCTACTACCTACTGCGCTAGGCAACGCACGCGCGTTTGCAACGCTTCGGTCCAAGTAGGCCGGTTTCGGACGATCTATGCAAATGATGTTCCGTGGTATTACTCCCCCTCCCCAAGAGAAAATGAATCCCTCCCCAAAACCCCACAGGTGCATAGATCATAGCGCCGTGATGCGTTCGGGTCCATCGCCTGCTTCAGGGCCAACTGCTTGTGGTGCAAAGGCCCACACACATACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGANGGCAGGGATGGTCGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTA]
consensusID : consensus_121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AACCGATCACCTTCGCCTCGAGCAACTAGATCATGTTCCGGCTATACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAAGAAGTTCTCCAACACCACATACACACACACACACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGAGGGCAGGGATGGTGGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTAGGTTTTCGTAAATAAGGTTTTAGGGCCTAGGGAATGCCGACAGGCGGCCTGCCTGTTGGGTGGCGCTTTAGAGGTGGTGTGCTAGGTTAGACATTTCTGTATTTTTTTTTTTTTTGGTAACCGTTTCGTCCGACCCTGTGGTTTCGACACATTCTAACGATCGATGCGGTGGGTCGTTTTCTTTGATTTGTTTTCTGAGTATTTCTATTTTAACAAGCACCAACAATTCCCGAAATTCAACGAATGGCGGCGCGGCGGTAGTGCTAGGAAGGCTGCAGCCTCGA]
[+] EMBL BX612636 [AACCGATCACCTTCGCCTCGAGCAACTAGATCATGTTCCGGCTATACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAAGAAGTTCTCCAACACCACATACACACACACACACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGAGGGCAGGGATGGTGGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTAGGTTTTCGTAAATAAGGTTTTAGGGCCTAGGGAATGCCGACAGGCGGCCTGCCTGTTGGGTGGCGCTTTAGAGGTGGTGTGCTAGGTTAGACATTTCTGTATTTTTTTTTTTTTTGGTAACCGTTTCGTCCGACCCTGTGGTTTCGACACATTCTAACGATCGATGCGGTGGGTCGTTTTCTTTGATTTGTTTTCTGAGTATTTCTATTTTAACAAGCACCAACAATTCCCGAAATTCAACGAATGGCGGCGCGGCGGTAGTGCTAGGAAGGCTGCAGCCTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_121#0 -------------------------------CATGTTCCGGCTGTACTCGCTGGTGCTGC 29
consensus_121#1 AACCGATCACCTTCGCCTCGAGCAACTAGATCATGTTCCGGCTATACTCGCTGGTGCTGC 60
************ ****************
consensus_121#0 ACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTC 89
consensus_121#1 ACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTC 120
************************************************************
consensus_121#0 TAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAGGAAGTTCTCCAACA 149
consensus_121#1 TAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAAGAAGTTCTCCAACA 180
********************************************* **************
consensus_121#0 CCACGTACCTTTTCGACAATCAAAACATGAAGGATCTGTACCTGGCCATGAGCCCGGTCG 209
consensus_121#1 CCACATACACACACACACACACACACACA---CACACGAAC---GCCAC--ACATGGTTG 232
**** *** * * * *** * * ** **** * *** *
consensus_121#0 ACCACCAGCAGTACCCGTGCGACAACCGAAACTACAGCTGGCGTCTGTACTTCGATGTTG 269
consensus_121#1 ATCG--ATTGGGAC---TAAGAGGGCAGGGATGGTGG--GGCGCATATCATCAGGCAGAG 285
* * * * ** * ** * * * * **** * * * * *
consensus_121#0 CCGTGCCCGGGCTGAAGAAATACTTCTTCAAGGAGGACCTCAACAATGT-CAAGCGAGCC 328
consensus_121#1 TTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTAGGTTTTCGTAAATAAGGT 345
*** * * * **** * * * ** * * * * ** **
consensus_121#0 CGCCAGGCGATGCGCAAGAAGGAGCTGATCGTTAACACTACGCTGTTTCTAATCGTCGGT 388
consensus_121#1 TTTAGGGC------CTAGGGAATGCCGACAGGCGGC-CTGC-CTGTTGGGTGGCGCTTTA 397
*** * ** ** ** * * ** * ***** **
consensus_121#0 CTGATGCTGCTCCAGCTCTACTACCTACTGCGCTAGGCAACGCACGCGCGTTTGCAACGC 448
consensus_121#1 GAGGTGGTGTGCTAGGTTAGACATTT-CTGTATT------TTTTTTTTTTTTGGTAACCG 450
* ** ** * ** * * * *** * ** * ***
consensus_121#0 TTCGGTCCAAGTAGGCCGGTTTCGGACGATCTATGCAAATGATGTTCCGTGGTATTA-CT 507
consensus_121#1 TTTCGTCCGACCCTGT-GGTTTCGACACATTCTAACGATCGATGCGGTGGGTCGTTTTCT 509
** **** * * ******* ** * * **** * * ** **
consensus_121#0 CCCCCTCCCCAAGAGAAAATGAATCCCTCCCCAAAACCCCACAGGTGCATAGAT-CATAG 566
consensus_121#1 TTGATTTGTTTTCTGAGTATTTCTATTTTAACAAGCACCAACAATTCCCGAAATTCAACG 569
* ** ** * * *** ** *** * * * ** ** *
consensus_121#0 CGCCGTGATGCGTTCG-GGTCCATCGCCTGCTTCAGGGCCAACTGCTTGTGGTGCAAAGG 625
consensus_121#1 AATGGCGGCGCGGCGGTAGTGCTAGGAAGGCTGCAGCCTCGA------------------ 611
* * *** * ** * * *** *** * *
consensus_121#0 CCCACACACATACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAA 685
consensus_121#1 ------------------------------------------------------------
consensus_121#0 GANGGCAGGGATGGTCGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATA 745
consensus_121#1 ------------------------------------------------------------
consensus_121#0 AAACATAATGGGATGCGTTA 765
consensus_121#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||