These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CCGCGGACGCGTGGGCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACAAAACCCGCCGGATCGTGACGCTCGAGAACTGCGTCAAGATAGTGCTGGACCAGCCGCCCCAGAACACAATCAACATCGTCTCGAAGACGGGCCAGATACAGCTGTACTCGCCGGACGAGGCGCTCGCCCGCCAGTGGACGAACGCGCTGCAGATCGTCGCGTTCCGGGACAAGTCCGGCCAGGGGGCGCCGCCGCCCCCGCCCCGCCCGAACACGATCGAGGAGGACAACGACCTCTACTGCTCGTCGTACAGCGAGGGCATCTACACGGTGACGCTCATCCCGACCGACGCCTCGATCAAGAACGGGCTCGAGCCGACGATGTACACGCTCGAGCTCGGGCAGACCGACATGCGGCTGAAGTGCTACGAGGACGAGAGCGTCACGGTGGCGGTGTGGCCGTACCGCTACATCCGCAAGTACGGCTACCGGGAGGGCAAGTTTACGTTCGA] [+] EMBL BM615186 [CCGCGGACGCGTGGGCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACAAAACCCGCCGGATCGTGACGCTCGAGAACTGCGTCAAGATAGTGCTGGACCAGCCGCCCCAGAACACAATCAACATCGTCTCGAAGACGGGCCAGATACAGCTGTACTCGCCGGACGAGGCGCTCGCCCGCCAGTGGACGAACGCGCTGCAGATCGTCGCGTTCCGGGACAAGTCCGGCCAGGGGGCGCCGCCGCCCCCGCCCCGCCCGAACACGATCGAGGAGGACAACGACCTCTACTGCTCGTCGTACAGCGAGGGCATCTACACGGTGACGCTCATCCCGACCGACGCCTCGATCAAGAACGGGCTCGAGCCGACGATGTACACGCTCGAGCTCGGGCAGACCGACATGCGGCTGAAGTGCTACGAGGACGAGAGCGTCACGGTGGCGGTGTGGCCGTACCGCTACATCCGCAAGTACGGCTACCGGGAGGGCAAGTTTACGTTCGA] consensusID : consensus_1219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCGCAAAGGGAAGCGAAAACGAGCGAGCGCACGCCCAAGGCAAGGCACGCAGAGGCTTGCAGAGGGGCAGACAATCGGTCCCAGTGCGCACACGGGTTAGCAGCGATCATTGTGTGGCCCACGGCGCCACGGGCACTGTCTTTGAGGGGCCATTAAGGGCCTAGTAGCCCTGCCTGTCACTCCGGACCCGAAACCCGTGTTGGATCTGTTTTTTGTTGGTGTTTTTTTTTCTTTCGCTTCAACCCTACCACCCCCGCATTCAGCCCTCCCTCCGCTGGCATCCCTTTTGTGAGTGTGGTAAAGTGCGCGCGGGGGGCGGGAGGGGCGGGTCCACATGGTATCCCCCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGCATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACA] [+] EMBL BM612544 [CCGCAAAGGGAAGCGAAAACGAGCGAGCGCACGCCCAAGGCAAGGCACGCAGAGGCTTGCAGAGGGGCAGACAATCGGTCCCAGTGCGCACACGGGTTAGCAGCGATCATTGTGTGGCCCACGGCGCCACGGGCACTGTCTTTGAGGGGCCATTAAGGGCCTAGTAGCCCTGCCTGTCACTCCGGACCCGAAACCCGTGTTGGATCTGTTTTTTGTTGGTGTTTTTTTTTCTTTCGCTTCAACCCTACCACCCCCGCATTCAGCCCTCCCTCCGCTGGCATCCCTTTTGTGAGTGTGGTAAAGTGCGCGCGGGGGGCGGGAGGGGCGGGTCCACATGGTATCCCCCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGCATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1219#0 CCGCGGACGCGTGGGCTGAGACGGGCGGGTGCGCAACAACAA-CAACAACAACGACGACG 59 consensus_1219#1 ------------------------------CCGCAAAGGGAAGCGAAAACGAGCGAGCGC 30 ***** ** * * *** * * consensus_1219#0 ACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAG--GAAAGCCCGTTCCTGTCCGGA 117 consensus_1219#1 ACGCCCAAGGCAAGGCACGCAGAGGCTTGCAGAGGGGCAGACAATCGGTCCCAGTGCGCA 90 *** ** * ** *** * * * * **** * ** * * ** ** ** ** * consensus_1219#0 TATC--TTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAAT 175 consensus_1219#1 CACGGGTTAGCAGCGA-TCATTGTGTGGCC---CACGGCG-----CCA-------CGGGC 134 * *** * * * ** * ***** ** **** *** * consensus_1219#0 ACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGATCGAGCGGCTCGAGATTAGCGACGGCG 235 consensus_1219#1 ACTGTC-----TTTGAG--GGGCCATTA-AGGGCCTAGTAGCCCTGCCT--GTCACTCCG 184 ****** ** ** * *** * ** * ** ** * * * ** ** consensus_1219#0 AGCACGACAAAACCCGCCGGATCG--TGACGCTCGAGAACTGCGTCAAGATAGTGCTGGA 293 consensus_1219#1 GACCCGA-AACCCGTGTTGGATCTGTTTTTTGTTGGTGTTTTTTTTTCTTTCGCTTCAAC 243 * *** ** * * ***** * * * * * * * consensus_1219#0 CCAGCCGCCCCAGAACACAATCAACAT--------CGTCTCGAAGACGGGCCAGATACAG 345 consensus_1219#1 CCTACCACCCCCGCATTCAGCCCTCCCTCCGCTGGCATCCCTTTTGTGAGTGTGGTAAAG 303 ** ** **** * * ** * * * ** * * * * ** ** consensus_1219#0 CTGTACTCGCCGGACGAGGCGCTCGCCCGCCAGTGGACGAACGCGCTGCAGATCGTCGCG 405 consensus_1219#1 -TGCGCGCGGGGGGCGGGAGGGGCGGGTCCACATGGT--ATCCCCCTG-AGACGGGCGGG 359 ** * ** ** ** * * ** * *** * * * *** *** * ** * consensus_1219#0 TTCCGGGACAAGTCCGGCCAGGG-GGCGCCGCCGCCCCCGCCC-CGCCCGAACACGATCG 463 consensus_1219#1 TGC-GCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGG 418 * * * **** * * * * ** ** ** * * * *** ** ****** * consensus_1219#0 AGGAGGACAACGACCTCTACTGCTCGTCGTACAGCGAGGGCATCTACACGGTGACGCTCA 523 consensus_1219#1 ACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGT-CGCAGAGTGGCTTT 477 * ***** * ** * * ** ** * ** * * * * * *** consensus_1219#0 TCCCGACCGACGCCTCGATCAAGAACGGGCTCGAGCCGACGATGTACACGCTCGAGCTCG 583 consensus_1219#1 TCATGGC--GTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACG 535 ** * * * * * * *** * * * * * * * ** * * ** consensus_1219#0 GGCAGACCGACATGCGGCTGAAGTGCTACGAGGACGAGAGCGTCACGGTGGCGGTGTGGC 643 consensus_1219#1 GGC--ATCGA---GCGGCTCGAGATTAGCGACGGCGAGCACGACA--------------- 575 *** * *** ****** ** *** * **** ** ** consensus_1219#0 CGTACCGCTACATCCGCAAGTACGGCTACCGGGAGGGCAAGTTTACGTTCGA 695 consensus_1219#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||